Factsheet for Solyc05g013220.2.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, golgi, plastid

Predictor Summary:

plastid 3
endoplasmic reticulum 2
cytosol 1
extracellular 1
vacuole 1
plasma membrane 1
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400014188	Potato	endoplasmic reticulum, golgi, plasma membrane	97.57	97.57
Solyc06g053870.2.1	Tomato	mitochondrion	76.88	77.98
CDX94721	Canola	cytosol	53.35	66.41
Solyc09g083050.2.1	Tomato	plasma membrane	67.34	64.72
Solyc03g005320.2.1	Tomato	plasma membrane	67.34	63.97
CDY63070	Canola	cytosol	47.67	63.86
CDX89834	Canola	plasma membrane	65.11	61.61
Solyc06g053900.2.1	Tomato	cytosol, plasma membrane, plastid	61.66	61.41
Solyc08g067410.1.1	Tomato	plasma membrane	62.07	60.59
Bra015296.1-P	Field mustard	endoplasmic reticulum, peroxisome, plasma membrane	64.91	60.49
CDY18212	Canola	plasma membrane	64.91	60.49
CDY14892	Canola	endoplasmic reticulum, golgi, plastid	64.3	60.27
Os11t0591200-01	Rice	mitochondrion	52.74	60.19
AT5G43760.1	Thale cress	endoplasmic reticulum, plasma membrane, plastid	64.5	60.11
Bra035992.1-P	Field mustard	plasma membrane	64.1	60.08
Solyc12g006820.1.1	Tomato	plasma membrane	60.85	60.0
CDX96912	Canola	endoplasmic reticulum, golgi, plastid	64.1	59.96
Bra033694.1-P	Field mustard	golgi, peroxisome, plastid	63.89	59.89
AT1G04220.1	Thale cress	plasma membrane	63.89	59.66
Solyc06g065560.1.1	Tomato	nucleus	61.66	59.26
TraesCS6A01G073300.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	58.42	56.69
TraesCS6B01G098300.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	58.22	55.95
TraesCS4D01G148300.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	58.01	55.86
TraesCS4A01G164400.1	Wheat	endoplasmic reticulum, peroxisome, plasma membrane	58.01	55.86
Zm00001d048953_P001	Maize	mitochondrion, plastid	57.61	55.36
Solyc04g080450.1.1	Tomato	golgi, peroxisome, plasma membrane	57.61	54.93
Solyc02g085870.2.1	Tomato	plasma membrane	54.56	54.23
KXG28804	Sorghum	plastid	57.0	53.83
Solyc02g063140.2.1	Tomato	golgi	53.96	53.63
GSMUA_Achr3P15310_001	Banana	cytosol, nucleus, plastid	52.74	53.28
TraesCS6D01G071600.1	Wheat	cytosol, endoplasmic reticulum, peroxisome, plastid	58.42	52.84
Solyc05g009270.2.1	Tomato	endoplasmic reticulum, golgi, plasma membrane	51.32	51.21
KRH04744	Soybean	endoplasmic reticulum, plasma membrane, vacuole	47.87	50.54
EES08876	Sorghum	cytosol, endoplasmic reticulum, plasma membrane	54.36	50.38
KRH57768	Soybean	plasma membrane	47.46	49.89
Solyc10g009240.2.1	Tomato	peroxisome	53.35	49.72
Solyc05g009280.2.1	Tomato	golgi, plasma membrane, plastid	51.93	49.33
Solyc08g067260.2.1	Tomato	cytosol, peroxisome, plasma membrane	48.68	47.43
Solyc09g065800.2.1	Tomato	endoplasmic reticulum, plasma membrane	38.74	42.35
Solyc09g065780.2.1	Tomato	endoplasmic reticulum, golgi	37.73	42.08

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	InterPro:3-ktacl-CoA_syn	Gene3D:3.40.47.10	MapMan:5.1.6.1.1	InterPro:ACP_syn_III_C
InterPro:FAE1_typ3_polyketide_synth	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006629	GO:GO:0006633
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	InterPro:IPR016039	UniProt:K4BY43	PFAM:PF08392
PFAM:PF08541	PIRSF:PIRSF036417	PANTHER:PTHR31561	PANTHER:PTHR31561:SF25	SUPFAM:SSF53901	EnsemblPlantsGene:Solyc05g013220.2
EnsemblPlants:Solyc05g013220.2.1	TMHMM:TMhelix	InterPro:Thiolase-like	UniParc:UPI0002765CC3	:	:

Description

3-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:K4BY43]

Coordinates

chr5:-:6279749..6282303

Molecular Weight (calculated)

55314.3 Da

IEP (calculated)

9.760

GRAVY (calculated)

-0.039

Length

493 amino acids

Sequence
(BLAST)

001: MAQNSPNGEI QSSNLPNFLL SVRLKYVKLG YHYLISNAIY LIIVPILVAV GLHLSTLTLE DLMKNLAMLK SYSTLVVFLG TIYFMSRPRN VYLVDFSCYK
101: PHERYMISKE RLVEKLTDIF DESSLNFQKK ILYNSGLSDK TYIPVDKWIP SNFSLSSNQN QAKLVIIGAI DDLLAKTDVK IRDIGFIIVN SSMFNPTPSL
201: SAMVVNHYKL SVNVITYNLG GMGCSAGLIS VDLANRLLQG KANSYALIVS TEIVSSAFYT GNDKSKLIPN MIFRMGASAV LLSNRFSDRR RSKYQLMHVV
301: RTHKGADDRA FSCVFQDEEE DGKKGMSLSK DLMAVAGEAL KTNITTLGPL VLPMSEQLLF FASLIARNVF KRKIKPYIPD FKMAFEHFCI HAGGRAVLDE
401: LQKNLDLSEA LMEPSRMTLY RFGNTSSSSV WYNLAYSEAK GRIKKGDRAW QIGFGSGFKC NSAVWRALKT VNPAKEKNAW TDEIDDFPAQ VSR

Best Arabidopsis Sequence Match ( AT1G04220.1 )
(BLAST)

001: MNENHIQSDH MNNTIHVTNK KLPNFLLSVR LKYVKLGYHY LISNAVYILI LPVGLLAATS SSFSLTDLTL LYNHLLKFHF LSSTLFAALL IFLTTLYFTT
101: RPRRIFLLDF ACYKPDSSLI CTRETFMDRS QRVGIFTEDN LAFQQKILER SGLGQKTYFP EALLRVPPNP CMSEARKEAE TVMFGAIDAV LEKTGVNPKD
201: IGILVVNCSL FNPTPSLSAM IVNKYKLRGN VLSYNLGGMG CSAGLISIDL AKQLLQVQPN SYALVVSTEN ITLNWYLGND RSMLLSNCIF RMGGAAVLLS
301: NRSSDRCRSK YQLIHTVRTH KGSDDNAFNC VYQREDNDDN KQIGVSLSKN LMAIAGEALK TNITTLGPLV LPMSEQLLFF ATLVARKVFN VKKIKPYIPD
401: FKLAFEHFCI HAGGRAVLDE IEKNLDLSEW HMEPSRMTLN RFGNTSSSSL WYELAYSEAK GRIKRGDRTW QIAFGSGFKC NSAVWRALRT IDPSKEKKKK
501: TNPWIDEIHE FPVPVPRTSP VTSSSESR

Arabidopsis Description

KCS23-ketoacyl-CoA synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q5XEP9]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.