Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plastid, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX94721 | Canola | cytosol | 72.59 | 96.97 |
| Bra033694.1-P | Field mustard | golgi, peroxisome, plastid | 94.9 | 95.44 |
| CDY14892 | Canola | endoplasmic reticulum, golgi, plastid | 94.71 | 95.25 |
| CDX96912 | Canola | endoplasmic reticulum, golgi, plastid | 94.52 | 94.88 |
| Bra035992.1-P | Field mustard | plasma membrane | 94.33 | 94.87 |
| AT1G04220.1 | Thale cress | plasma membrane | 87.71 | 87.88 |
| Os11t0591200-01 | Rice | mitochondrion | 59.17 | 72.45 |
| AT2G26640.1 | Thale cress | plasma membrane | 68.05 | 70.73 |
| PGSC0003DMT400042065 | Potato | cytosol | 48.96 | 69.62 |
| TraesCS6A01G073300.1 | Wheat | endoplasmic reticulum, peroxisome, plasma membrane | 64.84 | 67.52 |
| TraesCS6B01G098300.1 | Wheat | endoplasmic reticulum, peroxisome, plasma membrane | 64.84 | 66.86 |
| TraesCS4D01G148300.1 | Wheat | endoplasmic reticulum, peroxisome, plasma membrane | 64.65 | 66.8 |
| KXG28804 | Sorghum | plastid | 65.41 | 66.28 |
| Zm00001d048953_P001 | Maize | mitochondrion, plastid | 64.08 | 66.08 |
| TraesCS4A01G164400.1 | Wheat | endoplasmic reticulum, peroxisome, plasma membrane | 63.71 | 65.82 |
| PGSC0003DMT400014188 | Potato | endoplasmic reticulum, golgi, plasma membrane | 60.68 | 65.11 |
| Solyc05g013220.2.1 | Tomato | endoplasmic reticulum, golgi, plastid | 60.11 | 64.5 |
| PGSC0003DMT400042071 | Potato | plasma membrane | 59.36 | 64.34 |
| Solyc06g053870.2.1 | Tomato | mitochondrion | 58.41 | 63.58 |
| TraesCS6D01G071600.1 | Wheat | cytosol, endoplasmic reticulum, peroxisome, plastid | 65.03 | 63.12 |
| GSMUA_Achr3P15310_001 | Banana | cytosol, nucleus, plastid | 58.03 | 62.91 |
| AT1G19440.1 | Thale cress | golgi, peroxisome, plasma membrane | 61.25 | 62.79 |
| PGSC0003DMT400041959 | Potato | endoplasmic reticulum, golgi, vacuole | 51.98 | 62.64 |
| AT2G16280.1 | Thale cress | golgi, peroxisome, plasma membrane | 60.49 | 62.5 |
| AT4G34510.1 | Thale cress | plasma membrane | 56.33 | 61.19 |
| PGSC0003DMT400041960 | Potato | endoplasmic reticulum, golgi, vacuole | 50.66 | 59.82 |
| Solyc06g053900.2.1 | Tomato | cytosol, plasma membrane, plastid | 55.2 | 58.99 |
| AT1G25450.1 | Thale cress | plasma membrane | 54.82 | 58.94 |
| KRH04744 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 51.98 | 58.89 |
| AT1G68530.1 | Thale cress | plasma membrane | 55.01 | 58.55 |
| KRH57768 | Soybean | plasma membrane | 51.23 | 57.78 |
| AT1G01120.1 | Thale cress | plasma membrane | 57.66 | 57.77 |
| EES08876 | Sorghum | cytosol, endoplasmic reticulum, plasma membrane | 57.84 | 57.52 |
| AT2G46720.1 | Thale cress | endoplasmic reticulum, plasma membrane | 49.53 | 56.22 |
| AT3G10280.1 | Thale cress | endoplasmic reticulum, plasma membrane | 48.58 | 55.99 |
| AT2G15090.1 | Thale cress | golgi | 50.85 | 55.93 |
| AT4G34250.1 | Thale cress | endoplasmic reticulum, golgi | 50.47 | 54.16 |
| AT4G34520.1 | Thale cress | golgi | 51.8 | 54.15 |
| AT2G26250.1 | Thale cress | cytosol, endoplasmic reticulum, plasma membrane | 53.31 | 51.27 |
| AT1G71160.1 | Thale cress | endoplasmic reticulum, plasma membrane | 38.94 | 44.78 |
| AT5G49070.1 | Thale cress | plasma membrane, vacuole | 38.75 | 44.18 |
Protein Annotations
| KEGG:00061+2.3.1.180 | KEGG:00062+2.3.1.199 | InterPro:3-ktacl-CoA_syn | Gene3D:3.40.47.10 | MapMan:5.1.6.1.1 | EntrezGene:834398 |
| UniProt:A0A178UE45 | InterPro:ACP_syn_III_C | ProteinID:AED95007.1 | EMBL:AF424620 | ArrayExpress:AT5G43760 | EnsemblPlantsGene:AT5G43760 |
| RefSeq:AT5G43760 | TAIR:AT5G43760 | RefSeq:AT5G43760-TAIR-G | EnsemblPlants:AT5G43760.1 | TAIR:AT5G43760.1 | EMBL:AY035030 |
| EMBL:AY150469 | ProteinID:BAB11304.1 | CHEMBL:CHEMBL2242734 | InterPro:FAE1_typ3_polyketide_synth | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005575 | GO:GO:0006629 | GO:GO:0006633 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009409 | GO:GO:0009416 | GO:GO:0009628 | GO:GO:0009922 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016740 | GO:GO:0016746 | GO:GO:0016747 | GO:GO:0102336 |
| GO:GO:0102337 | GO:GO:0102338 | GO:GO:0102756 | InterPro:IPR016039 | Symbol:KCS20 | RefSeq:NP_199189.1 |
| ProteinID:OAO92156.1 | PFAM:PF08392 | PFAM:PF08541 | PIRSF:PIRSF036417 | PO:PO:0000013 | PO:PO:0000014 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0006504 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009001 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0009066 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0020148 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR31561 | PANTHER:PTHR31561:SF25 | UniProt:Q9FG87 |
| SUPFAM:SSF53901 | TMHMM:TMhelix | InterPro:Thiolase-like | UniParc:UPI0000048C01 | SEG:seg | : |
Description
KCS203-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:A0A178UE45]
Coordinates
chr5:+:17585523..17588733
Molecular Weight (calculated)
59309.9 Da
IEP (calculated)
9.210
GRAVY (calculated)
-0.102
Length
529 amino acids
Sequence
(BLAST)
(BLAST)
001: MSHNQNQPHR PVPVHVTNAE PNPNPNNLPN FLLSVRLKYV KLGYHYLISN ALYILLLPLL AATIANLSSF TINDLSLLYN TLRFHFLSAT LATALLISLS
101: TAYFTTRPRR VFLLDFSCYK PDPSLICTRE TFMDRSQRVG IFTEDNLAFQ QKILERSGLG QKTYFPEALL RVPPNPCMEE ARKEAETVMF GAIDAVLEKT
201: GVKPKDIGIL VVNCSLFNPT PSLSAMIVNK YKLRGNILSY NLGGMGCSAG LISIDLAKQM LQVQPNSYAL VVSTENITLN WYLGNDRSML LSNCIFRMGG
301: AAVLLSNRSS DRSRSKYQLI HTVRTHKGAD DNAFGCVYQR EDNNAEETGK IGVSLSKNLM AIAGEALKTN ITTLGPLVLP MSEQLLFFAT LVARKVFKVK
401: KIKPYIPDFK LAFEHFCIHA GGRAVLDEIE KNLDLSEWHM EPSRMTLNRF GNTSSSSLWY ELAYSEAKGR IKRGDRTWQI AFGSGFKCNS AVWKALRTID
501: PMDEKTNPWI DEIDDFPVQV PRITPITSS
101: TAYFTTRPRR VFLLDFSCYK PDPSLICTRE TFMDRSQRVG IFTEDNLAFQ QKILERSGLG QKTYFPEALL RVPPNPCMEE ARKEAETVMF GAIDAVLEKT
201: GVKPKDIGIL VVNCSLFNPT PSLSAMIVNK YKLRGNILSY NLGGMGCSAG LISIDLAKQM LQVQPNSYAL VVSTENITLN WYLGNDRSML LSNCIFRMGG
301: AAVLLSNRSS DRSRSKYQLI HTVRTHKGAD DNAFGCVYQR EDNNAEETGK IGVSLSKNLM AIAGEALKTN ITTLGPLVLP MSEQLLFFAT LVARKVFKVK
401: KIKPYIPDFK LAFEHFCIHA GGRAVLDEIE KNLDLSEWHM EPSRMTLNRF GNTSSSSLWY ELAYSEAKGR IKRGDRTWQI AFGSGFKCNS AVWKALRTID
501: PMDEKTNPWI DEIDDFPVQV PRITPITSS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.