Factsheet for Zm00001d030343_P001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, peroxisome, secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000055_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01120.1	Zm00001d000055_P001	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER91722	Sorghum	peroxisome	93.83	93.83
Zm00001d047931_P001	Maize	peroxisome	78.88	77.29
Zm00001d028406_P001	Maize	peroxisome	78.88	77.15
GSMUA_Achr1P02540_001	Banana	cytosol	60.0	75.71
CDY15199	Canola	cytosol	44.67	70.29
VIT_15s0048g02720.t01	Wine grape	cytosol, peroxisome, plasma membrane	61.68	62.26
KRH68953	Soybean	cytosol, golgi, nucleus	61.31	61.89
Solyc10g009240.2.1	Tomato	peroxisome	60.93	61.63
AT1G01120.1	Thale cress	plasma membrane	60.37	61.17
Zm00001d016438_P001	Maize	endoplasmic reticulum, peroxisome, plasma membrane	59.07	61.12
Zm00001d045660_P001	Maize	mitochondrion	33.08	60.82
Zm00001d039094_P001	Maize	cytosol	57.57	60.51
Bra032621.1-P	Field mustard	plasma membrane	55.51	60.49
PGSC0003DMT400028047	Potato	plasma membrane	60.0	60.0
CDY32443	Canola	plasma membrane	53.08	59.41
CDY37475	Canola	plasma membrane	52.9	59.2
Zm00001d009608_P001	Maize	plasma membrane	55.51	58.81
Zm00001d037328_P001	Maize	cytosol	40.19	58.58
CDX90012	Canola	cytosol	57.57	58.22
Zm00001d046444_P001	Maize	plasma membrane	55.7	57.86
Zm00001d039053_P001	Maize	plasma membrane	55.33	57.59
Zm00001d048061_P001	Maize	golgi	51.4	55.67
Zm00001d048953_P001	Maize	mitochondrion, plastid	52.9	55.17
AT2G46720.1	Thale cress	endoplasmic reticulum, plasma membrane	47.66	54.72
AT3G10280.1	Thale cress	endoplasmic reticulum, plasma membrane	46.73	54.47
Zm00001d028241_P003	Maize	endoplasmic reticulum, golgi, plasma membrane	50.09	54.25
Zm00001d032948_P001	Maize	endoplasmic reticulum, golgi, plasma membrane	46.92	50.71
Zm00001d027904_P001	Maize	plastid	51.22	50.46
Zm00001d051787_P001	Maize	mitochondrion	45.42	50.1
Zm00001d027766_P001	Maize	mitochondrion	48.78	49.34
Zm00001d017941_P001	Maize	plasma membrane	45.42	49.29
Zm00001d014168_P001	Maize	peroxisome, plasma membrane, plastid	46.36	49.11
Zm00001d044580_P001	Maize	mitochondrion	39.63	43.53
Zm00001d009354_P001	Maize	endoplasmic reticulum	38.69	42.59
Zm00001d044579_P001	Maize	golgi	38.69	41.9
CDY41551	Canola	golgi	48.41	41.18
CDX80041	Canola	endoplasmic reticulum, golgi, plasma membrane	48.41	40.66

Protein Annotations

KEGG:00061+2.3.1.180	KEGG:00062+2.3.1.199	InterPro:3-ktacl-CoA_syn	Gene3D:3.40.47.10	MapMan:5.1.6.1.1	UniProt:A0A1D6KC44
InterPro:ACP_syn_III_C	InterPro:FAE1_typ3_polyketide_synth	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0006629
GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	InterPro:IPR016039	ProteinID:ONM00850.1
PFAM:PF08392	PFAM:PF08541	PIRSF:PIRSF036417	PANTHER:PTHR31561	PANTHER:PTHR31561:SF67	SUPFAM:SSF53901
TMHMM:TMhelix	InterPro:Thiolase-like	UniParc:UPI000221B0E0	EnsemblPlantsGene:Zm00001d030343	EnsemblPlants:Zm00001d030343_P001	EnsemblPlants:Zm00001d030343_T001
SEG:seg	:	:	:	:	:

Description

Senescence-associated protein 15

Coordinates

chr1:-:123707667..123709274

Molecular Weight (calculated)

58870.1 Da

IEP (calculated)

9.111

GRAVY (calculated)

-0.042

Length

535 amino acids

Sequence
(BLAST)

001: MESAPSTAAV MERERLTAEL AFAEADAEPS SFVVKIRRRL PDFARSVNLK YVRLGLRSGA IPAPSSWVPL ALAPSLLVAA AYSLVGADKF YSLDLLTCIA
101: WLAAAVLLLT VYFLMRPRPV YLVDFACYRP GNEHAISKEG FLDMTESTGC FNAEALEFQT KITKRSGLGD RTYLPPGIQA RPPRLSMEEA RAEAEAVMFG
201: CLDSLFSATG IDPRRDVRVL IVNCSLFNPT PSLASMVVHR YKMREDVKSF NLGGMGCSAG LIAVDLARDM LQANPGCYAV VVSTENITLN WYFGNDRSML
301: LSNCIFRMGG AAALLSNRRA DAGRAKYRLL HTVRTHKGAA DECYGCVYQR EDGTGRVGVS LARELMAVAG DALKTNITTL GPLVLPISEQ LKFLKSLVLR
401: RALRSRGVRP YIPDFRRAFE HFCVHAGGRA VLEEVQRSLG LRDADMEPSR CTLHRFGNTS SSSLWYELAY AEAKGRVRRG HRVWQIGFGS GFKCNSAVWR
501: ALRDVPPVHA DGAGGGSNCN PWVDSIQSYP PKEYI

Best Arabidopsis Sequence Match ( AT1G01120.1 )
(BLAST)

001: MERTNSIEMD RERLTAEMAF RDSSSAVIRI RRRLPDLLTS VKLKYVKLGL HNSCNVTTIL FFLIILPLTG TVLVQLTGLT FDTFSELWSN QAVQLDTATR
101: LTCLVFLSFV LTLYVANRSK PVYLVDFSCY KPEDERKISV DSFLTMTEEN GSFTDDTVQF QQRISNRAGL GDETYLPRGI TSTPPKLNMS EARAEAEAVM
201: FGALDSLFEK TGIKPAEVGI LIVNCSLFNP TPSLSAMIVN HYKMREDIKS YNLGGMGCSA GLISIDLANN LLKANPNSYA VVVSTENITL NWYFGNDRSM
301: LLCNCIFRMG GAAILLSNRR QDRKKSKYSL VNVVRTHKGS DDKNYNCVYQ KEDERGTIGV SLARELMSVA GDALKTNITT LGPMVLPLSE QLMFLISLVK
401: RKMFKLKVKP YIPDFKLAFE HFCIHAGGRA VLDEVQKNLD LKDWHMEPSR MTLHRFGNTS SSSLWYEMAY TEAKGRVKAG DRLWQIAFGS GFKCNSAVWK
501: ALRPVSTEEM TGNAWAGSID QYPVKVVQ

Arabidopsis Description

KCS13-ketoacyl-CoA synthase [Source:UniProtKB/TrEMBL;Acc:A0A178W124]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.