Factsheet for TraesCS3D01G189800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G215400.1	Wheat	extracellular	99.18	99.18
TraesCS3A01G185800.1	Wheat	extracellular	99.18	99.18
Os01t0270100-01	Rice	plasma membrane	80.25	78.0
HORVU3Hr1G038190.1	Barley	endoplasmic reticulum, golgi, nucleus	97.12	77.38
GSMUA_AchrUn_...	Banana	cytosol	29.63	75.0
Zm00001d008268_P002	Maize	endoplasmic reticulum, extracellular	74.49	73.88
EES02749	Sorghum	extracellular	72.84	73.75
VIT_13s0084g00050.t01	Wine grape	cytosol	53.91	65.17
CDY42150	Canola	cytosol	54.32	65.02
CDY50343	Canola	cytosol	52.67	62.44
Bra038725.1-P	Field mustard	cytosol	52.26	61.95
PGSC0003DMT400068064	Potato	cytosol	49.79	60.2
Bra034755.1-P	Field mustard	extracellular	53.91	58.74
AT3G12490.2	Thale cress	extracellular	55.97	58.12
CDY08429	Canola	extracellular	54.73	58.08
CDY08430	Canola	extracellular	53.91	55.98
KRH20612	Soybean	endoplasmic reticulum	55.14	54.69
KRH13275	Soybean	mitochondrion	54.73	54.29
CDY50523	Canola	cytosol	32.1	52.0
Solyc03g097270.2.1	Tomato	extracellular	49.79	51.49
CDY03938	Canola	extracellular	44.03	50.95
TraesCS1D01G310300.1	Wheat	plastid	20.16	45.79
TraesCS5D01G502100.1	Wheat	cytosol	20.16	41.53
TraesCS5D01G502200.1	Wheat	extracellular	22.22	37.5
TraesCS1D01G255800.1	Wheat	extracellular	24.28	34.71
TraesCS3D01G325100.1	Wheat	extracellular, unclear	20.16	34.51
TraesCS5D01G502600.1	Wheat	extracellular	18.11	30.99

Protein Annotations

EnsemblPlants:TraesCS3D01G189800.1	EnsemblPlantsGene:TraesCS3D01G189800	Gene3D:3.10.450.10	Gene3D:3.10.450.650	GO:GO:0003674	GO:GO:0004869
GO:GO:0030234	InterPro:Cystatin	InterPro:Cystatin_dom	InterPro:Prot_inh_cystat_CS	PANTHER:PTHR11413	PANTHER:PTHR11413:SF56
PFAM:PD001231	PFAM:PF16845	ScanProsite:PS00287	SEG:seg	SignalP:SignalP-TM	SMART:SM00043
SUPFAM:SSF54403	TIGR:cd00042	TMHMM:TMhelix	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr3D:-:177483046..177485779

Molecular Weight (calculated)

26606.8 Da

IEP (calculated)

6.874

GRAVY (calculated)

-0.249

Length

243 amino acids

Sequence
(BLAST)

001: MRVAATRPAS SAPVALLAAL ALLFLVGSAS LAIGAMASHV LGGKSENPAA ANSLETDGLA RFAVDEHNKR ENALLEFVRV VEAKEQTVAG TLHHLTLEAL
101: EAGRKKVYEA KVWVKPWLDF KELQEFRHTG DATSFTISDL GAKRGGHEPG WRDVPVHDPV VKDAASHAVK SIQQRSNSLL PYELVEIVRA KAEVVEDFAK
201: FDILMKLKRG TKEEKMKAEV HKNLEGAFVL NQMQPEHDES SSQ

Best Arabidopsis Sequence Match ( AT3G12490.2 )
(BLAST)

001: MMRSRFLLFI VFFSLSLFIS SLIASDLGFC NEEMALVGGV GDVPANQNSG EVESLARFAV DEHNKKENAL LEFARVVKAK EQVVAGTLHH LTLEILEAGQ
101: KKLYEAKVWV KPWLNFKELQ EFKPASDAPA ITSSDLGCKQ GEHESGWREV PGDDPEVKHV AEQAVKTIQQ RSNSLFPYEL LEVVHAKAEV TGEAAKYNML
201: LKLKRGEKEE KFKVEVHKNH EGALHLNHAE QHHD

Arabidopsis Description

CYS6Cysteine proteinase inhibitor 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0X6]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.