Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G099400.1 | |
| TraesCS3B01G115800.1 | |
| TraesCS3D01G099700.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G10530.1 | TraesCS3A01G099400.1 | AT2G01950.1 | 19000166 |
| AT3G10530.1 | TraesCS3B01G115800.1 | AT2G01950.1 | 19000166 |
| AT3G10530.1 | TraesCS3D01G099700.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G069800.1 | Wheat | cytosol | 96.05 | 96.05 |
| TraesCS4B01G070900.1 | Wheat | cytosol | 96.05 | 96.05 |
| HORVU4Hr1G011790.3 | Barley | cytosol | 93.97 | 93.97 |
| HORVU2Hr1G124260.1 | Barley | plastid | 92.47 | 84.95 |
| GSMUA_Achr6P16550_001 | Banana | cytosol | 68.36 | 68.23 |
| PGSC0003DMT400078468 | Potato | nucleus | 58.38 | 61.39 |
| VIT_13s0074g00030.t01 | Wine grape | nucleus | 61.58 | 61.01 |
| KRH34701 | Soybean | nucleus | 60.83 | 60.37 |
| KRG92087 | Soybean | nucleus | 60.64 | 60.19 |
| Solyc05g008190.2.1 | Tomato | nucleus | 59.32 | 59.77 |
| AT3G10530.1 | Thale cress | nucleus | 59.32 | 58.77 |
| Bra029849.1-P | Field mustard | nucleus | 54.43 | 57.46 |
| CDY41358 | Canola | nucleus | 57.06 | 56.53 |
| CDY71163 | Canola | nucleus | 56.87 | 56.34 |
| Bra034124.1-P | Field mustard | nucleus | 56.87 | 56.34 |
| CDY08595 | Canola | mitochondrion, nucleus | 54.43 | 52.83 |
| CDY00951 | Canola | plastid | 54.05 | 52.09 |
Protein Annotations
| MapMan:17.1.3.2.1.11 | Gene3D:2.130.10.10 | InterPro:BING4_C_dom | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | PFAM:PD023243 | PFAM:PF00400 |
| PFAM:PF08149 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR14085 | SMART:SM00320 |
| SMART:SM01033 | SUPFAM:SSF50978 | EnsemblPlantsGene:TraesCS4A01G244000 | EnsemblPlants:TraesCS4A01G244000.2 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat |
| InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg | : | : |
Description
No Description!
Coordinates
chr4A:-:554632753..554637781
Molecular Weight (calculated)
60005.6 Da
IEP (calculated)
10.032
GRAVY (calculated)
-0.636
Length
531 amino acids
Sequence
(BLAST)
(BLAST)
001: MGIATEEDPK EMKNHQNSVD EMEMKVVRFS RGKAANLSAL RDKKLKGQLT GKEKLIGISA KAAAQAEKWF LPIEGGYLEP EGLEKTYRYT QEQIRGDVDI
101: SSKRKPFDMI LPELGPYTLE YTSNGRYMIV GGRKGHIGMM DMLSMNLIKE FQVRETVRDV AFLHNEQLFA VAQKKYPYIY NHHGTEIHCL KEHGKALKLQ
201: FLDKHFLLAS INSFGQLHYQ DMSTGEMIAN HRTGLGHTDV MRVNPYNAVI GLGHADGKVT MWKPTSVKPL VTMLCHNGHV TAVAFERGGH LMATAGLDKK
301: IKIWDLRKYE VVHTHAARAE SLDFSQKGLL AASDGSLVEI YRDAGGHDYK VYLKHRMVKG YQVGKVLFRP YEDICSIGHS TGFSSILVPG SGEANFDTFV
401: ENPVETAKQR REREVHALLN KLQPETVMLN PNMIGNVRQP KKKEKKTKKE VEEEIEDAVE AAKSTKVKNK TKGRSKPSKR AKKKEEEVLR AKRPLLDQYN
501: EIGGHPDKKQ RVGDKAELPK ALQRFAKNKQ S
101: SSKRKPFDMI LPELGPYTLE YTSNGRYMIV GGRKGHIGMM DMLSMNLIKE FQVRETVRDV AFLHNEQLFA VAQKKYPYIY NHHGTEIHCL KEHGKALKLQ
201: FLDKHFLLAS INSFGQLHYQ DMSTGEMIAN HRTGLGHTDV MRVNPYNAVI GLGHADGKVT MWKPTSVKPL VTMLCHNGHV TAVAFERGGH LMATAGLDKK
301: IKIWDLRKYE VVHTHAARAE SLDFSQKGLL AASDGSLVEI YRDAGGHDYK VYLKHRMVKG YQVGKVLFRP YEDICSIGHS TGFSSILVPG SGEANFDTFV
401: ENPVETAKQR REREVHALLN KLQPETVMLN PNMIGNVRQP KKKEKKTKKE VEEEIEDAVE AAKSTKVKNK TKGRSKPSKR AKKKEEEVLR AKRPLLDQYN
501: EIGGHPDKKQ RVGDKAELPK ALQRFAKNKQ S
001: MEISSEDNNL MEKVLPPVEQ ESDVELETKV KKYLRGEGAN LETLKDKKLK TQLASREKLY GKSAKAAAKI EKWLLPAEAG YLETEGLEKT WRVKQTDIAN
101: EVDILSSRNQ YDIVLPDFGP YKLDFTASGR HMLAGGRKGH LALLDMMNMS LIKEIQVRET VRDVAFLHND QFFAAAQKKY AYIYGRDGTE LHCLKERGPV
201: ARLRFLKNHF LLASVNMSGQ LHYQDVTHGG MVASIRTGKG RTDVMEVNPY NSVVGLGHSG GTVTMWKPTS QAPLVQMQCH PGPVSSVAFH PNGHLMATSG
301: KERKIKIWDL RKFEEVQTIH SFHAKTLSFS QKGLLAAGTG SFVQILGDSS GGSSHNYTRY MNHSMVKGYQ IEKVMFRPYE DVIGIGHSMG WSSILIPGSG
401: EPNFDSWVAN PFETSKQRRE KEVHSLLDKL PPETIMLDPS KIGAMRPSRR KEKPSRGEIE AEKEVAIEAA KSTELKNKTK GRNKPSKRTK KKKEMVENAK
501: RTFPEQEHNT AIKKRRIVED AAAELPTSLK RFARKN
101: EVDILSSRNQ YDIVLPDFGP YKLDFTASGR HMLAGGRKGH LALLDMMNMS LIKEIQVRET VRDVAFLHND QFFAAAQKKY AYIYGRDGTE LHCLKERGPV
201: ARLRFLKNHF LLASVNMSGQ LHYQDVTHGG MVASIRTGKG RTDVMEVNPY NSVVGLGHSG GTVTMWKPTS QAPLVQMQCH PGPVSSVAFH PNGHLMATSG
301: KERKIKIWDL RKFEEVQTIH SFHAKTLSFS QKGLLAAGTG SFVQILGDSS GGSSHNYTRY MNHSMVKGYQ IEKVMFRPYE DVIGIGHSMG WSSILIPGSG
401: EPNFDSWVAN PFETSKQRRE KEVHSLLDKL PPETIMLDPS KIGAMRPSRR KEKPSRGEIE AEKEVAIEAA KSTELKNKTK GRNKPSKRTK KKKEMVENAK
501: RTFPEQEHNT AIKKRRIVED AAAELPTSLK RFARKN
Arabidopsis Description
F18K10.11 protein [Source:UniProtKB/TrEMBL;Acc:Q9LPP3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.