CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY03088
CDY17621

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10530.1	CDY03088	AT2G01950.1	19000166
AT3G10530.1	CDY17621	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08595	Canola	mitochondrion, nucleus	89.47	90.13
CDY41358	Canola	nucleus	86.39	88.81
CDY71163	Canola	nucleus	86.39	88.81
AT3G10530.1	Thale cress	nucleus	81.49	83.77
PGSC0003DMT400078468	Potato	nucleus	61.34	66.93
Solyc05g008190.2.1	Tomato	nucleus	62.98	65.84
VIT_13s0074g00030.t01	Wine grape	nucleus	63.34	65.11
KRH34701	Soybean	nucleus	63.16	65.05
KRG92087	Soybean	nucleus	62.61	64.49
GSMUA_Achr6P16550_001	Banana	cytosol	59.89	62.03
EER88999	Sorghum	nucleus	54.45	58.82
EES05140	Sorghum	nucleus	55.17	57.9
Zm00001d036359_P001	Maize	nucleus	52.81	57.17
Os01t0183100-01	Rice	nucleus	55.35	57.12
HORVU2Hr1G046230.4	Barley	cytosol	10.16	56.57
HORVU4Hr1G011790.3	Barley	cytosol	53.54	55.56
TraesCS1D01G385600.1	Wheat	nucleus	52.09	54.46
TraesCS4B01G070900.1	Wheat	cytosol	52.45	54.43
TraesCS4D01G069800.1	Wheat	cytosol	52.45	54.43
TraesCS4A01G244000.2	Wheat	nucleus	52.09	54.05
TraesCS1B01G399700.1	Wheat	nucleus	52.27	53.93
HORVU2Hr1G124260.1	Barley	plastid	53.72	51.21
HORVU7Hr1G050690.1	Barley	cytosol, extracellular, nucleus	3.45	41.3
HORVU6Hr1G037120.1	Barley	cytosol, nucleus, plastid	5.26	39.19
HORVU5Hr1G075250.1	Barley	cytosol	3.27	39.13
HORVU4Hr1G011830.1	Barley	cytosol, mitochondrion, nucleus	6.53	38.3
HORVU6Hr1G016260.1	Barley	cytosol	5.08	37.84
HORVU7Hr1G043570.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	4.9	36.49

Protein Annotations

MapMan:17.1.3.2.1.11	Gene3D:2.130.10.10	InterPro:BING4_C_dom	EnsemblPlants:CDY00951	ProteinID:CDY00951	ProteinID:CDY00951.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00110960001	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PD023243	PFAM:PF00400	PFAM:PF08149	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR14085	SMART:SM00320	SMART:SM01033	SUPFAM:SSF50978	UniParc:UPI0004EEA6CB	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

BnaC05g42490D

Coordinates

chrLK031923:+:289936..292556

Molecular Weight (calculated)

61743.4 Da

IEP (calculated)

10.106

GRAVY (calculated)

-0.633

Length

551 amino acids

Sequence
(BLAST)

001: MPQLTHLSSA KPFKKASPSS CAVSSSPPPS QISNSRLSGY KEKLQGMTME VALEDNNLME KVLPPDEQEI DVELEAKEKK YLRGEGANLE TLKDKKLKTQ
101: LASRENLYGK SAKAAAKIEK WLLPASAGYL ETDGLEKTWR VKQTDIAKEV DILSSRNQYD IVLPDFGPYK LDFTASGRHM LAGGRKGHLA LVDMMSMNLI
201: KEIQVRETVR DVAFLHNDQF FAAAQKKYSY IYARDGTELH CLKERGPVAR LRFLKNHFLL ASVNKIGQLH YQDVTYGDMV ASIRTGKGRT DVMEVNPYNG
301: VVALGHSGGT VTMWKPTSQA PLVQMQCHPG PVSSVAFHPN GHLMATSGKE RKLKIWDLRK FEEVLGDSSG DYSRYMSHSM VKGYQIEKVM FRPYEDVLGI
401: GHSMGWSSVL IPGSGEPNFD SWVANPFETT KQRREKEVHL LLDKLPPETI MLDPSKIGAM RPSRRKERPT RGEIEAEKEV AVEAAKGVEL KKKTKGRNKP
501: SKRTKKKKEL VENVKKTFPE QEQGAAGKKR RIGEDAAADL PSSLKRFARK N

Best Arabidopsis Sequence Match ( AT3G10530.1 )
(BLAST)

001: MEISSEDNNL MEKVLPPVEQ ESDVELETKV KKYLRGEGAN LETLKDKKLK TQLASREKLY GKSAKAAAKI EKWLLPAEAG YLETEGLEKT WRVKQTDIAN
101: EVDILSSRNQ YDIVLPDFGP YKLDFTASGR HMLAGGRKGH LALLDMMNMS LIKEIQVRET VRDVAFLHND QFFAAAQKKY AYIYGRDGTE LHCLKERGPV
201: ARLRFLKNHF LLASVNMSGQ LHYQDVTHGG MVASIRTGKG RTDVMEVNPY NSVVGLGHSG GTVTMWKPTS QAPLVQMQCH PGPVSSVAFH PNGHLMATSG
301: KERKIKIWDL RKFEEVQTIH SFHAKTLSFS QKGLLAAGTG SFVQILGDSS GGSSHNYTRY MNHSMVKGYQ IEKVMFRPYE DVIGIGHSMG WSSILIPGSG
401: EPNFDSWVAN PFETSKQRRE KEVHSLLDKL PPETIMLDPS KIGAMRPSRR KEKPSRGEIE AEKEVAIEAA KSTELKNKTK GRNKPSKRTK KKKEMVENAK
501: RTFPEQEHNT AIKKRRIVED AAAELPTSLK RFARKN

Arabidopsis Description

F18K10.11 protein [Source:UniProtKB/TrEMBL;Acc:Q9LPP3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.