Factsheet for PGSC0003DMT400078468

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400075691

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10530.1	PGSC0003DMT400075691	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g008190.2.1	Tomato	nucleus	97.82	93.74
VIT_13s0074g00030.t01	Wine grape	nucleus	78.42	73.88
KRG92087	Soybean	nucleus	76.24	71.96
KRH34701	Soybean	nucleus	75.45	71.22
CDY41358	Canola	nucleus	72.08	67.91
CDY71163	Canola	nucleus	71.88	67.72
Bra034124.1-P	Field mustard	nucleus	71.68	67.54
Bra029849.1-P	Field mustard	nucleus	66.73	67.0
AT3G10530.1	Thale cress	nucleus	71.09	66.98
EER88999	Sorghum	nucleus	65.15	64.51
GSMUA_Achr6P16550_001	Banana	cytosol	67.92	64.47
EES05140	Sorghum	nucleus	65.35	62.86
Zm00001d036359_P001	Maize	nucleus	62.38	61.89
CDY08595	Canola	mitochondrion, nucleus	66.53	61.43
CDY00951	Canola	plastid	66.93	61.34
TraesCS1D01G385600.1	Wheat	nucleus	62.97	60.34
Os01t0183100-01	Rice	nucleus	63.56	60.11
HORVU4Hr1G011790.3	Barley	cytosol	63.17	60.08
TraesCS1B01G399700.1	Wheat	nucleus	63.17	59.74
HORVU2Hr1G046230.4	Barley	cytosol	11.68	59.6
TraesCS4B01G070900.1	Wheat	cytosol	62.38	59.32
TraesCS4D01G069800.1	Wheat	cytosol	62.18	59.13
TraesCS4A01G244000.2	Wheat	nucleus	61.39	58.38
HORVU2Hr1G124260.1	Barley	plastid	62.57	54.67
HORVU4Hr1G011830.1	Barley	cytosol, mitochondrion, nucleus	9.5	51.06
HORVU6Hr1G037120.1	Barley	cytosol, nucleus, plastid	5.74	39.19
HORVU6Hr1G016260.1	Barley	cytosol	5.54	37.84
HORVU7Hr1G050690.1	Barley	cytosol, extracellular, nucleus	3.37	36.96
HORVU7Hr1G043570.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	5.35	36.49
HORVU5Hr1G075250.1	Barley	cytosol	3.17	34.78

Protein Annotations

MapMan:17.1.3.2.1.11	Gene3D:2.130.10.10	InterPro:BING4_C_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M1D063	PFAM:PD023243	PFAM:PF00400
PFAM:PF08149	EnsemblPlantsGene:PGSC0003DMG400030544	PGSC:PGSC0003DMG400030544	EnsemblPlants:PGSC0003DMT400078468	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR14085	SMART:SM00320	SMART:SM01033	SUPFAM:SSF50978	UniParc:UPI0002955FD9	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

WD-repeat protein [Source:PGSC_GENE;Acc:PGSC0003DMG400030544]

Coordinates

chr5:+:4107884..4113266

Molecular Weight (calculated)

56689.8 Da

IEP (calculated)

10.300

GRAVY (calculated)

-0.531

Length

505 amino acids

Sequence
(BLAST)

001: MDMKKKKYLR GEGASLKDLK DKKLQGQLVV QEELFGKSAA AAAKAEKWLM PSEGGYLEGD GIEKTWRIKQ DAIASEVDIL SSRKQFDIVL PDFGPYTLEF
101: TPSGRYMAAA GRKGHIAIVD MKNMSAIKEL QVRETVRDVV FLHNELFFAA AQKKYPYIYN REGTELHCMK EHGAVLKLQF LRNHFLLASI NKFGQLHYQD
201: VTTGQMVANV RTGLGRTDVM QVNPFNGVVA VGHSGGTVSM WKPTSAAPLV KMLCHPGPVT ALAFHPNGHL MATAGMEKKI KIWDLRKFEV LQTLPGHCKS
301: LDFSQKGLLA TATGSFVQVY GDLSGSQNYS RYMTHSVAKG YQVKKVTFRP YEDVLGIGHS MGWSSILIPG SGEPNFDSWV ANPFETSKQR REKEIRTLLD
401: KLPPETIMLD PTKIGSVRPE RKKEKPSKED REAEMEAAIE EAKNIHMKKK TKGRSKPSRI AKKKQEAVEK AKKPFLEQHT NKRKPTEETQ LPKSLERFVR
501: KKAAA

Best Arabidopsis Sequence Match ( AT3G10530.1 )
(BLAST)

001: MEISSEDNNL MEKVLPPVEQ ESDVELETKV KKYLRGEGAN LETLKDKKLK TQLASREKLY GKSAKAAAKI EKWLLPAEAG YLETEGLEKT WRVKQTDIAN
101: EVDILSSRNQ YDIVLPDFGP YKLDFTASGR HMLAGGRKGH LALLDMMNMS LIKEIQVRET VRDVAFLHND QFFAAAQKKY AYIYGRDGTE LHCLKERGPV
201: ARLRFLKNHF LLASVNMSGQ LHYQDVTHGG MVASIRTGKG RTDVMEVNPY NSVVGLGHSG GTVTMWKPTS QAPLVQMQCH PGPVSSVAFH PNGHLMATSG
301: KERKIKIWDL RKFEEVQTIH SFHAKTLSFS QKGLLAAGTG SFVQILGDSS GGSSHNYTRY MNHSMVKGYQ IEKVMFRPYE DVIGIGHSMG WSSILIPGSG
401: EPNFDSWVAN PFETSKQRRE KEVHSLLDKL PPETIMLDPS KIGAMRPSRR KEKPSRGEIE AEKEVAIEAA KSTELKNKTK GRNKPSKRTK KKKEMVENAK
501: RTFPEQEHNT AIKKRRIVED AAAELPTSLK RFARKN

Arabidopsis Description

F18K10.11 protein [Source:UniProtKB/TrEMBL;Acc:Q9LPP3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.