CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 21132161
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH42483
KRH58580

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10530.1	KRH42483	AT2G01950.1	19000166
AT3G10530.1	KRH58580	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34701	Soybean	nucleus	95.89	95.89
VIT_13s0074g00030.t01	Wine grape	nucleus	78.32	78.17
PGSC0003DMT400078468	Potato	nucleus	71.96	76.24
Solyc05g008190.2.1	Tomato	nucleus	73.08	74.19
Bra029849.1-P	Field mustard	nucleus	64.49	68.59
GSMUA_Achr6P16550_001	Banana	cytosol	68.04	68.42
CDY41358	Canola	nucleus	68.22	68.1
CDY71163	Canola	nucleus	68.22	68.1
Bra034124.1-P	Field mustard	nucleus	68.04	67.91
AT3G10530.1	Thale cress	nucleus	68.04	67.91
EER88999	Sorghum	nucleus	60.37	63.33
CDY08595	Canola	mitochondrion, nucleus	64.49	63.07
Zm00001d036359_P001	Maize	nucleus	59.63	62.67
HORVU2Hr1G046230.4	Barley	cytosol	11.59	62.63
CDY00951	Canola	plastid	64.49	62.61
HORVU4Hr1G011790.3	Barley	cytosol	62.06	62.52
EES05140	Sorghum	nucleus	60.75	61.9
TraesCS4D01G069800.1	Wheat	cytosol	60.75	61.21
Os01t0183100-01	Rice	nucleus	60.93	61.05
TraesCS4B01G070900.1	Wheat	cytosol	60.56	61.02
TraesCS4A01G244000.2	Wheat	nucleus	60.19	60.64
TraesCS1D01G385600.1	Wheat	nucleus	59.07	59.96
TraesCS1B01G399700.1	Wheat	nucleus	59.63	59.74
HORVU2Hr1G124260.1	Barley	plastid	60.93	56.4
HORVU4Hr1G011830.1	Barley	cytosol, mitochondrion, nucleus	9.53	54.26
HORVU6Hr1G037120.1	Barley	cytosol, nucleus, plastid	5.98	43.24
HORVU7Hr1G043570.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	5.79	41.89
HORVU6Hr1G016260.1	Barley	cytosol	5.79	41.89
HORVU7Hr1G050690.1	Barley	cytosol, extracellular, nucleus	3.36	39.13
HORVU5Hr1G075250.1	Barley	cytosol	3.18	36.96

Protein Annotations

EntrezGene:100802940	MapMan:17.1.3.2.1.11	Gene3D:2.130.10.10	EMBL:ACUP02012728	InterPro:BING4_C_dom	EnsemblPlantsGene:GLYMA_20G190200
GO:GO:0000462	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0030686	GO:GO:0032040	UniProt:I1NHQ5	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	EnsemblPlants:KRG92087	ProteinID:KRG92087	ProteinID:KRG92087.1	PFAM:PD023243	PFAM:PF00400
PFAM:PF08149	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR14085	SMART:SM00320
SMART:SM01033	SUPFAM:SSF50978	UniParc:UPI000233DAE4	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr20:-:42890470..42897140

Molecular Weight (calculated)

60115.9 Da

IEP (calculated)

10.315

GRAVY (calculated)

-0.570

Length

535 amino acids

Sequence
(BLAST)

001: MGEIQESKAL AKSKPSTEQD VTDELDLRMK KYLRGEGANL EGLKDKKLKG QLAVKEDLYG KSAKAAAKAE KWLMPSEGGY LEAEGLEKTW RIKQEAIARE
101: VDISSSGKQY DIILPELGPY TLDFTSSGRY MAVSGRKGHL GIVDMINLSL IREFQVRETV RDVAFLHNEL FFVAAQKKYP YIYNREGTEL HCLKEHGPVL
201: RLQFLENHFL LASINKFGQL RYQDVTMGSM VGNFRTGLGR TNVMQVNPFN GVVSLGHSGG TVTMWKPTSA SPLVKMLCHH GPVSALAFHS NGHLMATAGK
301: DKKIKLWDLR KFEVLQTLPG HATTLDFSQK GLLACGNGSL IQVLRDVSGT QNYSKYMTHS MVKGYQIGKL VFRPYEDVLG IGHSMGWSSI LIPGAGEPNF
401: DSWVANPFET SKQRREKEIR SLLDKLPPET IMLDPSKIGT VKPRREKPTK QEREAEIEAD VEAAKGKKLK KKTKGRNKPG KRVQKKQEAV ARVKRPYLEQ
501: KIQEEESISR KKQKTREGVE LPKSLQRFVR KKASS

Best Arabidopsis Sequence Match ( AT3G10530.1 )
(BLAST)

001: MEISSEDNNL MEKVLPPVEQ ESDVELETKV KKYLRGEGAN LETLKDKKLK TQLASREKLY GKSAKAAAKI EKWLLPAEAG YLETEGLEKT WRVKQTDIAN
101: EVDILSSRNQ YDIVLPDFGP YKLDFTASGR HMLAGGRKGH LALLDMMNMS LIKEIQVRET VRDVAFLHND QFFAAAQKKY AYIYGRDGTE LHCLKERGPV
201: ARLRFLKNHF LLASVNMSGQ LHYQDVTHGG MVASIRTGKG RTDVMEVNPY NSVVGLGHSG GTVTMWKPTS QAPLVQMQCH PGPVSSVAFH PNGHLMATSG
301: KERKIKIWDL RKFEEVQTIH SFHAKTLSFS QKGLLAAGTG SFVQILGDSS GGSSHNYTRY MNHSMVKGYQ IEKVMFRPYE DVIGIGHSMG WSSILIPGSG
401: EPNFDSWVAN PFETSKQRRE KEVHSLLDKL PPETIMLDPS KIGAMRPSRR KEKPSRGEIE AEKEVAIEAA KSTELKNKTK GRNKPSKRTK KKKEMVENAK
501: RTFPEQEHNT AIKKRRIVED AAAELPTSLK RFARKN

Arabidopsis Description

F18K10.11 protein [Source:UniProtKB/TrEMBL;Acc:Q9LPP3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.