Factsheet for Solyc05g008190.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g008430.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10530.1	Solyc04g008430.1.1	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078468	Potato	nucleus	93.74	97.82
VIT_13s0074g00030.t01	Wine grape	nucleus	76.66	75.37
KRG92087	Soybean	nucleus	74.19	73.08
KRH34701	Soybean	nucleus	73.43	72.34
CDY41358	Canola	nucleus	70.97	69.78
CDY71163	Canola	nucleus	70.78	69.59
Bra034124.1-P	Field mustard	nucleus	70.59	69.4
Bra029849.1-P	Field mustard	nucleus	65.65	68.79
AT3G10530.1	Thale cress	nucleus	69.83	68.66
GSMUA_Achr6P16550_001	Banana	cytosol	67.17	66.54
EER88999	Sorghum	nucleus	62.81	64.9
EES05140	Sorghum	nucleus	63.38	63.62
CDY08595	Canola	mitochondrion, nucleus	65.46	63.07
Zm00001d036359_P001	Maize	nucleus	60.91	63.06
CDY00951	Canola	plastid	65.84	62.98
TraesCS1D01G385600.1	Wheat	nucleus	61.67	61.67
Os01t0183100-01	Rice	nucleus	62.43	61.61
TraesCS1B01G399700.1	Wheat	nucleus	62.05	61.24
HORVU4Hr1G011790.3	Barley	cytosol	61.48	61.02
TraesCS4B01G070900.1	Wheat	cytosol	60.72	60.26
TraesCS4D01G069800.1	Wheat	cytosol	60.53	60.08
HORVU2Hr1G046230.4	Barley	cytosol	11.2	59.6
TraesCS4A01G244000.2	Wheat	nucleus	59.77	59.32
HORVU2Hr1G124260.1	Barley	plastid	60.91	55.54
HORVU4Hr1G011830.1	Barley	cytosol, mitochondrion, nucleus	9.11	51.06
HORVU6Hr1G037120.1	Barley	cytosol, nucleus, plastid	5.5	39.19
HORVU6Hr1G016260.1	Barley	cytosol	5.31	37.84
HORVU7Hr1G050690.1	Barley	cytosol, extracellular, nucleus	3.23	36.96
HORVU7Hr1G043570.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	5.12	36.49
HORVU5Hr1G075250.1	Barley	cytosol	3.04	34.78

Protein Annotations

MapMan:17.1.3.2.1.11	Gene3D:2.130.10.10	InterPro:BING4_C_dom	GO:GO:0000462	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030686	GO:GO:0032040
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:K4BWZ3	PFAM:PD023243	PFAM:PF00400
PFAM:PF08149	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR14085	SMART:SM00320	SMART:SM01033
SUPFAM:SSF50978	EnsemblPlantsGene:Solyc05g008190.2	EnsemblPlants:Solyc05g008190.2.1	UniParc:UPI000276628B	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5:-:2575652..2581304

Molecular Weight (calculated)

59106.6 Da

IEP (calculated)

10.155

GRAVY (calculated)

-0.522

Length

527 amino acids

Sequence
(BLAST)

001: MVVKVDNTES IPATDEVISE EMDMKKKKYL RGEAANLKDL KDKKLQGQLA VQEELFGKSA AAAAKAEKWL MPSEGGYLEG DGIEKTWRIK QDAIASEVDI
101: LSSRKQFDIV LPDFGPYTLE FTPSGRYMAA AGRKGHIAIV DMKNMSAIKE LQVRETVRDV VFLHNELFFA AAQKKYPYIY NREGTELHCM KEHGAVLKLQ
201: FLRNHFLLAS INKFGQLHYQ DVTTGQMVAN VRTGLGRTDV MQVNPFNGVI AVGHSGGTVS MWKPTSAAPL VKMLCHPGPV TALAFHPNGH LMATAGMERK
301: IKIWDLRKFE VLQTLTGHCK SLDFSQKGLL ATGTGSFVQV YGDLSGSQNY SRYMTHSVAK GYQVKKVTFR PYEDVLGIGH SMGWSSILIP GSGEPNFDSW
401: VANPFETSKQ RREKEIRSLL DKLPPETIML DPTKIGSVRP ERKKEKPSKE DREAEMEAAI EEAKNIHMKK KTKGRSKPSK IAKKKQEAVE KAKKPFLEQH
501: ANKKRKPTEE TQLPKSLERF VRKKVAA

Best Arabidopsis Sequence Match ( AT3G10530.1 )
(BLAST)

001: MEISSEDNNL MEKVLPPVEQ ESDVELETKV KKYLRGEGAN LETLKDKKLK TQLASREKLY GKSAKAAAKI EKWLLPAEAG YLETEGLEKT WRVKQTDIAN
101: EVDILSSRNQ YDIVLPDFGP YKLDFTASGR HMLAGGRKGH LALLDMMNMS LIKEIQVRET VRDVAFLHND QFFAAAQKKY AYIYGRDGTE LHCLKERGPV
201: ARLRFLKNHF LLASVNMSGQ LHYQDVTHGG MVASIRTGKG RTDVMEVNPY NSVVGLGHSG GTVTMWKPTS QAPLVQMQCH PGPVSSVAFH PNGHLMATSG
301: KERKIKIWDL RKFEEVQTIH SFHAKTLSFS QKGLLAAGTG SFVQILGDSS GGSSHNYTRY MNHSMVKGYQ IEKVMFRPYE DVIGIGHSMG WSSILIPGSG
401: EPNFDSWVAN PFETSKQRRE KEVHSLLDKL PPETIMLDPS KIGAMRPSRR KEKPSRGEIE AEKEVAIEAA KSTELKNKTK GRNKPSKRTK KKKEMVENAK
501: RTFPEQEHNT AIKKRRIVED AAAELPTSLK RFARKN

Arabidopsis Description

F18K10.11 protein [Source:UniProtKB/TrEMBL;Acc:Q9LPP3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.