Factsheet for Os01t0183100-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 23777608
nucleus: 26035336

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os10t0114400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10530.1	Os10t0114400-01	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER88999	Sorghum	nucleus	77.72	81.37
EES05140	Sorghum	nucleus	79.59	80.95
Zm00001d036359_P001	Maize	nucleus	74.91	78.59
TraesCS1D01G385600.1	Wheat	nucleus	76.59	77.61
TraesCS1B01G399700.1	Wheat	nucleus	76.59	76.59
HORVU2Hr1G046230.4	Barley	cytosol	13.67	73.74
GSMUA_Achr6P16550_001	Banana	cytosol	71.16	71.43
PGSC0003DMT400078468	Potato	nucleus	60.11	63.56
VIT_13s0074g00030.t01	Wine grape	nucleus	63.67	63.43
Solyc05g008190.2.1	Tomato	nucleus	61.61	62.43
Bra029849.1-P	Field mustard	nucleus	57.68	61.23
KRH34701	Soybean	nucleus	61.24	61.12
KRG92087	Soybean	nucleus	61.05	60.93
AT3G10530.1	Thale cress	nucleus	61.05	60.82
CDY41358	Canola	nucleus	59.93	59.7
Bra034124.1-P	Field mustard	nucleus	59.93	59.7
CDY71163	Canola	nucleus	59.74	59.51
CDY08595	Canola	mitochondrion, nucleus	57.68	56.31
CDY00951	Canola	plastid	57.12	55.35
HORVU6Hr1G037120.1	Barley	cytosol, nucleus, plastid	6.74	48.65
HORVU7Hr1G050690.1	Barley	cytosol, extracellular, nucleus	4.12	47.83
HORVU6Hr1G016260.1	Barley	cytosol	6.55	47.3
HORVU7Hr1G043570.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	6.37	45.95
HORVU5Hr1G075250.1	Barley	cytosol	3.93	45.65

Protein Annotations

MapMan:17.1.3.2.1.11	Gene3D:2.130.10.10	EntrezGene:4325333	EMBL:AK111760	ProteinID:BAA99518.1	ProteinID:BAF04138.1
ProteinID:BAS70749.1	InterPro:BING4_C_dom	ncoils:Coil	ProteinID:EEE54003.1	GO:GO:0000462	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030686
GO:GO:0032040	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlantsGene:Os01g0183100	EnsemblPlants:Os01t0183100-01
PFAM:PD023243	PFAM:PF00400	PFAM:PF08149	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR14085	UniProt:Q9LGT2	SMART:SM00320	SMART:SM01033	SUPFAM:SSF50978	UniParc:UPI00000A01FE
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_015638856.1
RefSeq:XP_015638915.1	SEG:seg	:	:	:	:

Description

OsWD40-5Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 domain containing protein. (Os01t0183100-01)

Coordinates

chr1:+:4397653..4401942

Molecular Weight (calculated)

60507.2 Da

IEP (calculated)

10.046

GRAVY (calculated)

-0.657

Length

534 amino acids

Sequence
(BLAST)

001: MASAKPAAEQ KAMEGGEQEA LDEMEKKVHK YSRGKAAYLG TLRDKKLKGQ LAAREKLYGH SAKAAVQTEK WLLPTEGGYL EPDDDGLEKT YRYQQTSLRE
101: DVDLLSSRKP FDMILPLLGP YTLGYTGNGR YMVVGGRKGH VAMMDMLNLE LVKEFQVRET VRDVAFLHNE QLYAVAQKKY PYIYNRHGTE IHCLKEHGKS
201: LKLQFLEKHF LLSSINSFGQ LHYQDISTGE MVANYRTGLG RTDVMRLNPY NAVIGLGHAG GKVTMWKPTS VKPLVTMLCH SGPVTAIAFD RGGHLMATAG
301: VDRKVKIWDL RKYEVINSYA ARAQSLDFSQ KGLLACSNGS QVEIFRDTGG QDYKIYMKHR MVKGYQIGKV LFRPYEDVLG IGHSMGLSAI LVPGSGEPNF
401: DTFVDNPVET SKQRREKEVQ SLLNKLQPET IMLNPNMIAT VRPSRKKEKK TKKEIEEEME DAVEAAKSIE FKKKTKGRSK ASKRAKKREE EVLKAKRPFL
501: EQHKENDGRP DKKQRVSEEI ELPKALQRFA KSRQ

Best Arabidopsis Sequence Match ( AT3G10530.1 )
(BLAST)

001: MEISSEDNNL MEKVLPPVEQ ESDVELETKV KKYLRGEGAN LETLKDKKLK TQLASREKLY GKSAKAAAKI EKWLLPAEAG YLETEGLEKT WRVKQTDIAN
101: EVDILSSRNQ YDIVLPDFGP YKLDFTASGR HMLAGGRKGH LALLDMMNMS LIKEIQVRET VRDVAFLHND QFFAAAQKKY AYIYGRDGTE LHCLKERGPV
201: ARLRFLKNHF LLASVNMSGQ LHYQDVTHGG MVASIRTGKG RTDVMEVNPY NSVVGLGHSG GTVTMWKPTS QAPLVQMQCH PGPVSSVAFH PNGHLMATSG
301: KERKIKIWDL RKFEEVQTIH SFHAKTLSFS QKGLLAAGTG SFVQILGDSS GGSSHNYTRY MNHSMVKGYQ IEKVMFRPYE DVIGIGHSMG WSSILIPGSG
401: EPNFDSWVAN PFETSKQRRE KEVHSLLDKL PPETIMLDPS KIGAMRPSRR KEKPSRGEIE AEKEVAIEAA KSTELKNKTK GRNKPSKRTK KKKEMVENAK
501: RTFPEQEHNT AIKKRRIVED AAAELPTSLK RFARKN

Arabidopsis Description

F18K10.11 protein [Source:UniProtKB/TrEMBL;Acc:Q9LPP3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.