Factsheet for VIT_13s0074g00030.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g06410.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10530.1	VIT_01s0011g06410.t01	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078468	Potato	nucleus	73.88	78.42
KRG92087	Soybean	nucleus	78.17	78.32
KRH34701	Soybean	nucleus	77.8	77.94
Solyc05g008190.2.1	Tomato	nucleus	75.37	76.66
AT3G10530.1	Thale cress	nucleus	70.71	70.71
CDY41358	Canola	nucleus	70.34	70.34
CDY71163	Canola	nucleus	70.34	70.34
Bra034124.1-P	Field mustard	nucleus	70.15	70.15
Bra029849.1-P	Field mustard	nucleus	65.11	69.38
GSMUA_Achr6P16550_001	Banana	cytosol	68.66	69.17
EER88999	Sorghum	nucleus	62.69	65.88
EES05140	Sorghum	nucleus	63.43	64.76
Zm00001d036359_P001	Maize	nucleus	61.01	64.24
Os01t0183100-01	Rice	nucleus	63.43	63.67
CDY08595	Canola	mitochondrion, nucleus	64.93	63.62
CDY00951	Canola	plastid	65.11	63.34
HORVU4Hr1G011790.3	Barley	cytosol	62.69	63.28
TraesCS4B01G070900.1	Wheat	cytosol	61.38	61.96
TraesCS4D01G069800.1	Wheat	cytosol	61.38	61.96
TraesCS4A01G244000.2	Wheat	nucleus	61.01	61.58
TraesCS1D01G385600.1	Wheat	nucleus	60.07	61.1
TraesCS1B01G399700.1	Wheat	nucleus	60.82	61.05
HORVU2Hr1G046230.4	Barley	cytosol	11.19	60.61
HORVU2Hr1G124260.1	Barley	plastid	62.13	57.61
HORVU4Hr1G011830.1	Barley	cytosol, mitochondrion, nucleus	9.51	54.26
HORVU6Hr1G037120.1	Barley	cytosol, nucleus, plastid	5.97	43.24
HORVU6Hr1G016260.1	Barley	cytosol	5.78	41.89
HORVU7Hr1G043570.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	5.6	40.54
HORVU7Hr1G050690.1	Barley	cytosol, extracellular, nucleus	3.36	39.13
HORVU5Hr1G075250.1	Barley	cytosol	3.17	36.96

Protein Annotations

EntrezGene:100241077	wikigene:100241077	MapMan:17.1.3.2.1.11	Gene3D:2.130.10.10	InterPro:BING4_C_dom	ProteinID:CBI40185
ProteinID:CBI40185.3	UniProt:D7UBS0	EMBL:FN596753	GO:GO:0000462	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030686	GO:GO:0032040
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EntrezGene:LOC100241077	wikigene:LOC100241077	PFAM:PD023243
PFAM:PF00400	PFAM:PF08149	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR14085
SMART:SM00320	SMART:SM01033	SUPFAM:SSF50978	UniParc:UPI00019847CF	ArrayExpress:VIT_13s0074g00030	EnsemblPlantsGene:VIT_13s0074g00030
EnsemblPlants:VIT_13s0074g00030.t01	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
RefSeq:XP_002269978	RefSeq:XP_002269978.2	RefSeq:XP_019080135.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr13:+:7376270..7391355

Molecular Weight (calculated)

60200.1 Da

IEP (calculated)

10.058

GRAVY (calculated)

-0.521

Length

536 amino acids

Sequence
(BLAST)

001: MGVEQENGTP TEMVPASEQD ISDELDVKVK KYLRGEGANL EALQDKKLKG QLVIREELYG KSAKAAAKAE KWLMPSEGGY LEAEGIEKTW RIKQESIARE
101: VDILSSKNQY DIVLPELGPY TLDFTSSGRY MAVGGRKGHL AIIDMKNMGV IKDFQVRETV RDVVFLHNEL FFAAAQKKYP YIYNRDGTEL HCLKEHGSVL
201: KLQFLKNHFL LASINKFGQL HYQDVTMGEM VGNYRTGLGR TAVMQVNPFN GVVGLGHSGG IVTMWKPTSS APLVKMLCHH GPISALAFHP NGHLMATAGM
301: DKKIKLWDLR KFEVLQTLPG HAKTLDFSQK GLLATGTGSF VQILGDFSGT ENYSRYMGHS MAKGYQIGKV LFRPYEDVLS IGHSMGWSCI LIPGSGEPNF
401: DSWVANPFET SKQRREKEVH SLLDKLPPET IMLDPTKIGT VRQSRKREKP TKQERKAEME AAVEDAKSIP LRKKMKGKNK PSKKVKKREE AVARAKKPFL
501: ERQMEEENLS TKKQKISGEI ELPKSLQRFA RKKATT

Best Arabidopsis Sequence Match ( AT3G10530.1 )
(BLAST)

001: MEISSEDNNL MEKVLPPVEQ ESDVELETKV KKYLRGEGAN LETLKDKKLK TQLASREKLY GKSAKAAAKI EKWLLPAEAG YLETEGLEKT WRVKQTDIAN
101: EVDILSSRNQ YDIVLPDFGP YKLDFTASGR HMLAGGRKGH LALLDMMNMS LIKEIQVRET VRDVAFLHND QFFAAAQKKY AYIYGRDGTE LHCLKERGPV
201: ARLRFLKNHF LLASVNMSGQ LHYQDVTHGG MVASIRTGKG RTDVMEVNPY NSVVGLGHSG GTVTMWKPTS QAPLVQMQCH PGPVSSVAFH PNGHLMATSG
301: KERKIKIWDL RKFEEVQTIH SFHAKTLSFS QKGLLAAGTG SFVQILGDSS GGSSHNYTRY MNHSMVKGYQ IEKVMFRPYE DVIGIGHSMG WSSILIPGSG
401: EPNFDSWVAN PFETSKQRRE KEVHSLLDKL PPETIMLDPS KIGAMRPSRR KEKPSRGEIE AEKEVAIEAA KSTELKNKTK GRNKPSKRTK KKKEMVENAK
501: RTFPEQEHNT AIKKRRIVED AAAELPTSLK RFARKN

Arabidopsis Description

F18K10.11 protein [Source:UniProtKB/TrEMBL;Acc:Q9LPP3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.