Factsheet for Zm00001d036359_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000055_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10530.1	Zm00001d000055_P001	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER88999	Sorghum	nucleus	92.53	92.35
EES05140	Sorghum	nucleus	92.34	89.52
Os01t0183100-01	Rice	nucleus	78.59	74.91
TraesCS1D01G385600.1	Wheat	nucleus	76.23	73.62
TraesCS1B01G399700.1	Wheat	nucleus	75.64	72.1
HORVU2Hr1G046230.4	Barley	cytosol	13.95	71.72
GSMUA_Achr6P16550_001	Banana	cytosol	73.67	70.49
PGSC0003DMT400078468	Potato	nucleus	61.89	62.38
VIT_13s0074g00030.t01	Wine grape	nucleus	64.24	61.01
Solyc05g008190.2.1	Tomato	nucleus	63.06	60.91
KRH34701	Soybean	nucleus	63.06	60.0
KRG92087	Soybean	nucleus	62.67	59.63
Bra029849.1-P	Field mustard	nucleus	57.56	58.25
AT3G10530.1	Thale cress	nucleus	60.9	57.84
CDY41358	Canola	nucleus	60.12	57.09
Bra034124.1-P	Field mustard	nucleus	60.12	57.09
CDY71163	Canola	nucleus	59.92	56.9
CDY08595	Canola	mitochondrion, nucleus	57.56	53.56
CDY00951	Canola	plastid	57.17	52.81
HORVU7Hr1G050690.1	Barley	cytosol, extracellular, nucleus	4.72	52.17
HORVU6Hr1G037120.1	Barley	cytosol, nucleus, plastid	7.27	50.0
HORVU5Hr1G075250.1	Barley	cytosol	4.52	50.0
HORVU6Hr1G016260.1	Barley	cytosol	7.07	48.65
HORVU7Hr1G043570.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	6.88	47.3

Protein Annotations

EntrezGene:100191648	MapMan:17.1.3.2.1.11	Gene3D:2.130.10.10	UniProt:A0A1D6LMP2	ProteinID:AQK80840.1	InterPro:BING4_C_dom
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PD023243	PFAM:PF00400	PFAM:PF08149	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR14085	SMART:SM00320	SMART:SM01033	SUPFAM:SSF50978	UniParc:UPI000842A59B
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	EnsemblPlantsGene:Zm00001d036359
EnsemblPlants:Zm00001d036359_P001	EnsemblPlants:Zm00001d036359_T001	SEG:seg	:	:	:

Description

Transducin/WD40 repeat-like superfamily protein

Coordinates

chr6:-:85619900..85628099

Molecular Weight (calculated)

57423.7 Da

IEP (calculated)

10.106

GRAVY (calculated)

-0.583

Length

509 amino acids

Sequence
(BLAST)

001: MAHGDFVTPE NTPIAALHQA LGDKKLKGQL SVKEKLYGQS AKAAANAEKW LMPNDGGILE PGHLEKTYRF SQEDILTEVD LLSSRKPFDM ILPVLGPYNI
101: GYTSNGRYML VGGRKGHLAM MDMLHMDLIK EFEVRETVRD VTFLHNEQLY AVAQKKYPYI YNRHGTEIHC LKEHGKALKL QFLSKQFLLA SINSFGQLHY
201: QDVSTGEMVA NYRTGLGRTD VMRGNPYNAV IGLGHAGGKV TMWKPTSVKP LVTMLCHHGP VTAVAFDRGG NLMATAGVDR KIKIWDLRKY EVVRSYPMRA
301: QSLDFSQKGL LACSNGSQVE IYRDFGGHDY RLYMKHKIVK GYQVGKVVFR PYEDILGIGH SMGFSSILVP GSGEPNFDTF VDNPMETTKQ KREKEVHALL
401: DKLPPETIML NPNTIATVRA PKKKEKKTKE EIEEEMADAV EAAKNTERKK KTKGRSKPSK RAKKKEEDVF KAKRPFLEQS DKVDGRPDKK QRIGELPKAL
501: QRFAKKPQS

Best Arabidopsis Sequence Match ( AT3G10530.1 )
(BLAST)

001: MEISSEDNNL MEKVLPPVEQ ESDVELETKV KKYLRGEGAN LETLKDKKLK TQLASREKLY GKSAKAAAKI EKWLLPAEAG YLETEGLEKT WRVKQTDIAN
101: EVDILSSRNQ YDIVLPDFGP YKLDFTASGR HMLAGGRKGH LALLDMMNMS LIKEIQVRET VRDVAFLHND QFFAAAQKKY AYIYGRDGTE LHCLKERGPV
201: ARLRFLKNHF LLASVNMSGQ LHYQDVTHGG MVASIRTGKG RTDVMEVNPY NSVVGLGHSG GTVTMWKPTS QAPLVQMQCH PGPVSSVAFH PNGHLMATSG
301: KERKIKIWDL RKFEEVQTIH SFHAKTLSFS QKGLLAAGTG SFVQILGDSS GGSSHNYTRY MNHSMVKGYQ IEKVMFRPYE DVIGIGHSMG WSSILIPGSG
401: EPNFDSWVAN PFETSKQRRE KEVHSLLDKL PPETIMLDPS KIGAMRPSRR KEKPSRGEIE AEKEVAIEAA KSTELKNKTK GRNKPSKRTK KKKEMVENAK
501: RTFPEQEHNT AIKKRRIVED AAAELPTSLK RFARKN

Arabidopsis Description

F18K10.11 protein [Source:UniProtKB/TrEMBL;Acc:Q9LPP3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.