Factsheet for TraesCS1B01G399700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G099400.1
TraesCS3B01G115800.1
TraesCS3D01G099700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10530.1	TraesCS3A01G099400.1	AT2G01950.1	19000166
AT3G10530.1	TraesCS3B01G115800.1	AT2G01950.1	19000166
AT3G10530.1	TraesCS3D01G099700.1	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G385600.1	Wheat	nucleus	93.07	94.31
TraesCS4B01G070900.1	Wheat	cytosol	80.34	80.79
EER88999	Sorghum	nucleus	74.53	78.04
EES05140	Sorghum	nucleus	75.84	77.14
HORVU2Hr1G046230.4	Barley	cytosol	14.23	76.77
Os01t0183100-01	Rice	nucleus	76.59	76.59
Zm00001d036359_P001	Maize	nucleus	72.1	75.64
GSMUA_Achr6P16550_001	Banana	cytosol	66.85	67.11
PGSC0003DMT400078468	Potato	nucleus	59.74	63.17
Solyc05g008190.2.1	Tomato	nucleus	61.24	62.05
VIT_13s0074g00030.t01	Wine grape	nucleus	61.05	60.82
KRH34701	Soybean	nucleus	59.74	59.63
KRG92087	Soybean	nucleus	59.74	59.63
AT3G10530.1	Thale cress	nucleus	58.24	58.02
Bra029849.1-P	Field mustard	nucleus	54.12	57.46
CDY41358	Canola	nucleus	56.74	56.53
Bra034124.1-P	Field mustard	nucleus	56.74	56.53
CDY71163	Canola	nucleus	56.55	56.34
CDY08595	Canola	mitochondrion, nucleus	54.12	52.83
CDY00951	Canola	plastid	53.93	52.27
HORVU7Hr1G043570.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	6.74	48.65
HORVU6Hr1G037120.1	Barley	cytosol, nucleus, plastid	6.74	48.65
HORVU6Hr1G016260.1	Barley	cytosol	6.55	47.3
HORVU7Hr1G050690.1	Barley	cytosol, extracellular, nucleus	3.93	45.65
HORVU5Hr1G075250.1	Barley	cytosol	3.75	43.48

Protein Annotations

MapMan:17.1.3.2.1.11	Gene3D:2.130.10.10	InterPro:BING4_C_dom	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PD023243	PFAM:PF00400
PFAM:PF08149	ScanProsite:PS00678	PFscan:PS50294	PANTHER:PTHR14085	SMART:SM00320	SMART:SM01033
SUPFAM:SSF50978	EnsemblPlantsGene:TraesCS1B01G399700	EnsemblPlants:TraesCS1B01G399700.1	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1B:+:630705225..630710557

Molecular Weight (calculated)

60318.0 Da

IEP (calculated)

10.135

GRAVY (calculated)

-0.622

Length

534 amino acids

Sequence
(BLAST)

001: MGIATEGDPS ERENRRGSPD EMEMKVARFS RGKAANLGDL RDKKLKGQLA GKEKLIGVSA KAAAQAEKWL LPSVGGYLEP EGLEKTYRFE QWSILPKVDI
101: WSSRKSFDMI LPVLGPYTLE YTPNGRYMIV GGRKGHIAFM DMLNNMELIN EFEVKETVRD VAFLQNEQLF AVAQKKYTYI YNRHGTEIHC LKEHGESLKL
201: QFLDKHLLLA SINSFGQLHY QDMSTGEMVA NYSTGLGRTD VMRVNPYNAV IGLGHARGKL TMWKPTSAKP LVTMLCHKGP LTAVAFDRGG HLMATAGADR
301: NRKIKIWDLR KFEVVHSYTA RAQSLDFSQK GLLASSNGSL VEIYRDCGGQ DYKIYMKHRM IKGYQVGKVL FRPYEDICGI GHSKGFSSIL IPGSGEPNFD
401: TFVDNPMETG KQRQEKEVQA LLDKLQPETI MLDPNVIATV KQLKKKKKKT KKEIEDEIEG AVEAAKNIRV KNKTKGRSKP SRRAKKEEEE VLRAKRPLLD
501: QHKEASGHPD KKQRISDETG LPKTLQRFAK NRQS

Best Arabidopsis Sequence Match ( AT3G10530.1 )
(BLAST)

001: MEISSEDNNL MEKVLPPVEQ ESDVELETKV KKYLRGEGAN LETLKDKKLK TQLASREKLY GKSAKAAAKI EKWLLPAEAG YLETEGLEKT WRVKQTDIAN
101: EVDILSSRNQ YDIVLPDFGP YKLDFTASGR HMLAGGRKGH LALLDMMNMS LIKEIQVRET VRDVAFLHND QFFAAAQKKY AYIYGRDGTE LHCLKERGPV
201: ARLRFLKNHF LLASVNMSGQ LHYQDVTHGG MVASIRTGKG RTDVMEVNPY NSVVGLGHSG GTVTMWKPTS QAPLVQMQCH PGPVSSVAFH PNGHLMATSG
301: KERKIKIWDL RKFEEVQTIH SFHAKTLSFS QKGLLAAGTG SFVQILGDSS GGSSHNYTRY MNHSMVKGYQ IEKVMFRPYE DVIGIGHSMG WSSILIPGSG
401: EPNFDSWVAN PFETSKQRRE KEVHSLLDKL PPETIMLDPS KIGAMRPSRR KEKPSRGEIE AEKEVAIEAA KSTELKNKTK GRNKPSKRTK KKKEMVENAK
501: RTFPEQEHNT AIKKRRIVED AAAELPTSLK RFARKN

Arabidopsis Description

F18K10.11 protein [Source:UniProtKB/TrEMBL;Acc:Q9LPP3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.