Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU3Hr1G018030.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G10530.1 | HORVU3Hr1G018030.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU7Hr1G050690.1 | Barley | cytosol, extracellular, nucleus | 95.65 | 95.65 |
| HORVU6Hr1G037120.1 | Barley | cytosol, nucleus, plastid | 97.83 | 60.81 |
| HORVU6Hr1G016260.1 | Barley | cytosol | 97.83 | 60.81 |
| HORVU7Hr1G043570.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 95.65 | 59.46 |
| HORVU2Hr1G046230.4 | Barley | cytosol | 50.0 | 23.23 |
| HORVU4Hr1G011790.3 | Barley | cytosol | 58.7 | 5.08 |
| HORVU2Hr1G124260.1 | Barley | plastid | 58.7 | 4.67 |
| Zm00001d036359_P001 | Maize | nucleus | 50.0 | 4.52 |
| GSMUA_Achr6P16550_001 | Banana | cytosol | 52.17 | 4.51 |
| EES05140 | Sorghum | nucleus | 50.0 | 4.38 |
| EER88999 | Sorghum | nucleus | 47.83 | 4.31 |
| Os01t0183100-01 | Rice | nucleus | 45.65 | 3.93 |
| TraesCS1D01G385600.1 | Wheat | nucleus | 43.48 | 3.8 |
| TraesCS1B01G399700.1 | Wheat | nucleus | 43.48 | 3.75 |
| Bra029849.1-P | Field mustard | nucleus | 39.13 | 3.58 |
| CDY08595 | Canola | mitochondrion, nucleus | 39.13 | 3.29 |
| CDY00951 | Canola | plastid | 39.13 | 3.27 |
| KRG92087 | Soybean | nucleus | 36.96 | 3.18 |
| VIT_13s0074g00030.t01 | Wine grape | nucleus | 36.96 | 3.17 |
| PGSC0003DMT400078468 | Potato | nucleus | 34.78 | 3.17 |
| Solyc05g008190.2.1 | Tomato | nucleus | 34.78 | 3.04 |
| KRH34701 | Soybean | nucleus | 34.78 | 2.99 |
| CDY71163 | Canola | nucleus | 34.78 | 2.99 |
| CDY41358 | Canola | nucleus | 34.78 | 2.99 |
| Bra034124.1-P | Field mustard | nucleus | 34.78 | 2.99 |
| AT3G10530.1 | Thale cress | nucleus | 34.78 | 2.99 |
| HORVU4Hr1G011830.1 | Barley | cytosol, mitochondrion, nucleus | 4.35 | 2.13 |
Protein Annotations
| EnsemblPlants:HORVU5Hr1G075250.1 | EnsemblPlantsGene:HORVU5Hr1G075250 | UniParc:UPI000B47B204 | UniProt:A0A287RU16 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chrchr5H:-:546474495..546474718
Molecular Weight (calculated)
5180.4 Da
IEP (calculated)
4.494
GRAVY (calculated)
0.365
Length
46 amino acids
Sequence
(BLAST)
(BLAST)
1: MIVGGRNGHI GMMDMLSMDL IKEFQVSSQY FSSFPSMLDV CNTFTI
001: MEISSEDNNL MEKVLPPVEQ ESDVELETKV KKYLRGEGAN LETLKDKKLK TQLASREKLY GKSAKAAAKI EKWLLPAEAG YLETEGLEKT WRVKQTDIAN
101: EVDILSSRNQ YDIVLPDFGP YKLDFTASGR HMLAGGRKGH LALLDMMNMS LIKEIQVRET VRDVAFLHND QFFAAAQKKY AYIYGRDGTE LHCLKERGPV
201: ARLRFLKNHF LLASVNMSGQ LHYQDVTHGG MVASIRTGKG RTDVMEVNPY NSVVGLGHSG GTVTMWKPTS QAPLVQMQCH PGPVSSVAFH PNGHLMATSG
301: KERKIKIWDL RKFEEVQTIH SFHAKTLSFS QKGLLAAGTG SFVQILGDSS GGSSHNYTRY MNHSMVKGYQ IEKVMFRPYE DVIGIGHSMG WSSILIPGSG
401: EPNFDSWVAN PFETSKQRRE KEVHSLLDKL PPETIMLDPS KIGAMRPSRR KEKPSRGEIE AEKEVAIEAA KSTELKNKTK GRNKPSKRTK KKKEMVENAK
501: RTFPEQEHNT AIKKRRIVED AAAELPTSLK RFARKN
101: EVDILSSRNQ YDIVLPDFGP YKLDFTASGR HMLAGGRKGH LALLDMMNMS LIKEIQVRET VRDVAFLHND QFFAAAQKKY AYIYGRDGTE LHCLKERGPV
201: ARLRFLKNHF LLASVNMSGQ LHYQDVTHGG MVASIRTGKG RTDVMEVNPY NSVVGLGHSG GTVTMWKPTS QAPLVQMQCH PGPVSSVAFH PNGHLMATSG
301: KERKIKIWDL RKFEEVQTIH SFHAKTLSFS QKGLLAAGTG SFVQILGDSS GGSSHNYTRY MNHSMVKGYQ IEKVMFRPYE DVIGIGHSMG WSSILIPGSG
401: EPNFDSWVAN PFETSKQRRE KEVHSLLDKL PPETIMLDPS KIGAMRPSRR KEKPSRGEIE AEKEVAIEAA KSTELKNKTK GRNKPSKRTK KKKEMVENAK
501: RTFPEQEHNT AIKKRRIVED AAAELPTSLK RFARKN
Arabidopsis Description
F18K10.11 protein [Source:UniProtKB/TrEMBL;Acc:Q9LPP3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.