Factsheet for HORVU4Hr1G011830.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
TargetP:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G018030.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10530.1	HORVU3Hr1G018030.1	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G011790.3	Barley	cytosol	82.98	14.69
HORVU2Hr1G124260.1	Barley	plastid	80.85	13.15
GSMUA_Achr6P16550_001	Banana	cytosol	56.38	9.96
KRG92087	Soybean	nucleus	54.26	9.53
VIT_13s0074g00030.t01	Wine grape	nucleus	54.26	9.51
PGSC0003DMT400078468	Potato	nucleus	51.06	9.5
KRH34701	Soybean	nucleus	53.19	9.35
AT3G10530.1	Thale cress	nucleus	53.19	9.33
CDY41358	Canola	nucleus	52.13	9.14
CDY71163	Canola	nucleus	52.13	9.14
Bra034124.1-P	Field mustard	nucleus	52.13	9.14
Solyc05g008190.2.1	Tomato	nucleus	51.06	9.11
Bra029849.1-P	Field mustard	nucleus	38.3	7.16
CDY08595	Canola	mitochondrion, nucleus	38.3	6.58
CDY00951	Canola	plastid	38.3	6.53
HORVU5Hr1G075250.1	Barley	cytosol	2.13	4.35
HORVU7Hr1G050690.1	Barley	cytosol, extracellular, nucleus	2.13	4.35
HORVU6Hr1G016260.1	Barley	cytosol	2.13	2.7
HORVU6Hr1G037120.1	Barley	cytosol, nucleus, plastid	2.13	2.7
HORVU7Hr1G043570.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	2.13	2.7
HORVU2Hr1G046230.4	Barley	cytosol	1.06	1.01

Protein Annotations

EnsemblPlants:HORVU4Hr1G011830.1	EnsemblPlantsGene:HORVU4Hr1G011830	InterPro:BING4_C_dom	PANTHER:PTHR14085	PFAM:PD023243	PFAM:PF08149
SMART:SM01033	UniParc:UPI000B45FA0A	UniProt:A0A287N853	MapMan:17.1.3.2.1.11	:	:

Description

No Description!

Coordinates

chrchr4H:+:37532406..37539512

Molecular Weight (calculated)

10396.6 Da

IEP (calculated)

9.008

GRAVY (calculated)

-0.040

Length

94 amino acids

Sequence
(BLAST)

1: SYFRLQDLIR ATMMASNSAR AESLDFSHKG LLAASNGSLV EVYMDAGGHD YKIYMKHRMV KGYQIGKVLF RPYEDICSIG HSMGFSSILV PGSA

Best Arabidopsis Sequence Match ( AT3G10530.1 )
(BLAST)

001: MEISSEDNNL MEKVLPPVEQ ESDVELETKV KKYLRGEGAN LETLKDKKLK TQLASREKLY GKSAKAAAKI EKWLLPAEAG YLETEGLEKT WRVKQTDIAN
101: EVDILSSRNQ YDIVLPDFGP YKLDFTASGR HMLAGGRKGH LALLDMMNMS LIKEIQVRET VRDVAFLHND QFFAAAQKKY AYIYGRDGTE LHCLKERGPV
201: ARLRFLKNHF LLASVNMSGQ LHYQDVTHGG MVASIRTGKG RTDVMEVNPY NSVVGLGHSG GTVTMWKPTS QAPLVQMQCH PGPVSSVAFH PNGHLMATSG
301: KERKIKIWDL RKFEEVQTIH SFHAKTLSFS QKGLLAAGTG SFVQILGDSS GGSSHNYTRY MNHSMVKGYQ IEKVMFRPYE DVIGIGHSMG WSSILIPGSG
401: EPNFDSWVAN PFETSKQRRE KEVHSLLDKL PPETIMLDPS KIGAMRPSRR KEKPSRGEIE AEKEVAIEAA KSTELKNKTK GRNKPSKRTK KKKEMVENAK
501: RTFPEQEHNT AIKKRRIVED AAAELPTSLK RFARKN

Arabidopsis Description

F18K10.11 protein [Source:UniProtKB/TrEMBL;Acc:Q9LPP3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.