Factsheet for HORVU2Hr1G124260.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
TargetP:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G018030.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10530.1	HORVU3Hr1G018030.1	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G011790.3	Barley	cytosol	87.54	95.29
TraesCS4D01G069800.1	Wheat	cytosol	86.33	93.97
TraesCS4B01G070900.1	Wheat	cytosol	85.47	93.03
TraesCS4A01G244000.2	Wheat	nucleus	84.95	92.47
HORVU2Hr1G046230.4	Barley	cytosol	15.22	88.89
HORVU4Hr1G011830.1	Barley	cytosol, mitochondrion, nucleus	13.15	80.85
GSMUA_Achr6P16550_001	Banana	cytosol	63.84	69.36
HORVU6Hr1G037120.1	Barley	cytosol, nucleus, plastid	8.13	63.51
PGSC0003DMT400078468	Potato	nucleus	54.67	62.57
HORVU6Hr1G016260.1	Barley	cytosol	7.96	62.16
VIT_13s0074g00030.t01	Wine grape	nucleus	57.61	62.13
KRG92087	Soybean	nucleus	56.4	60.93
Solyc05g008190.2.1	Tomato	nucleus	55.54	60.91
HORVU7Hr1G050690.1	Barley	cytosol, extracellular, nucleus	4.84	60.87
HORVU7Hr1G043570.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	7.79	60.81
KRH34701	Soybean	nucleus	56.23	60.75
AT3G10530.1	Thale cress	nucleus	55.19	59.51
HORVU5Hr1G075250.1	Barley	cytosol	4.67	58.7
Bra029849.1-P	Field mustard	nucleus	50.69	58.25
CDY41358	Canola	nucleus	53.29	57.46
CDY71163	Canola	nucleus	53.11	57.28
Bra034124.1-P	Field mustard	nucleus	53.11	57.28
CDY08595	Canola	mitochondrion, nucleus	51.21	54.11
CDY00951	Canola	plastid	51.21	53.72

Protein Annotations

MapMan:17.1.3.2.1.11	Gene3D:2.130.10.10	UniProt:A0A287JSF0	InterPro:BING4_C_dom	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:HORVU2Hr1G124260	EnsemblPlants:HORVU2Hr1G124260.1	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	PFAM:PD023243	PFAM:PF00400	PFAM:PF08149	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR14085	SMART:SM00320	SMART:SM01033	SUPFAM:SSF50978	UniParc:UPI000B484825
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

No Description!

Coordinates

chrchr2H:-:758305836..758312222

Molecular Weight (calculated)

65006.0 Da

IEP (calculated)

10.396

GRAVY (calculated)

-0.632

Length

578 amino acids

Sequence
(BLAST)

001: RHHAPLLAVA PRLPPPSLQA PPPHRSTGSP ARRRRPSPDA YAFSVSRMGI AATEDPKEMK NHQHPVDEME MKVVKFSRGK AANLAAMRDK KLKGQLTGKE
101: KLIGISAKAA AQAEKWFLPV EGGYLEPEGL EKTYRFSQHQ LRDGVDILNS RKPFDMILPE LGPYTLEYTS NGRYMIVGGR KGHIGMMDML SMDLIKEFQV
201: RETVRDVAFL HNEQLFAVAQ KKYPYIYNRH GTEIHCLKEH GKALKLQFLD KHFLLASINS FGQLHYQDMS TGEMVANHRT GLGRTDVMRV NPYNAVIGLG
301: HAGGKVTMWK PTSVKPLVTM LCHNGPVTAV AFERGGHLMA TAGVDKKIKI WDLRKYEVVR THHARAESLD FSQKGLLAAS NGSLVEVYKD GGGHDYKIYM
401: KHRMVKGYQI GKVLFRPYED ICSLGHSMGF SSILVPGSGE ANFDTFVENP VETAKQRRER EVHALLNKLQ PETVMLNPNM IGNVRQPKKK EKKTKKEVEE
501: EIEDAVEAAK STKVKNKTKG RSKPSKKAKK KEEEVLRAKR PLLDQYKEIG GNPEKKQRVG DKAELPKALQ RFAKNKPS

Best Arabidopsis Sequence Match ( AT3G10530.1 )
(BLAST)

001: MEISSEDNNL MEKVLPPVEQ ESDVELETKV KKYLRGEGAN LETLKDKKLK TQLASREKLY GKSAKAAAKI EKWLLPAEAG YLETEGLEKT WRVKQTDIAN
101: EVDILSSRNQ YDIVLPDFGP YKLDFTASGR HMLAGGRKGH LALLDMMNMS LIKEIQVRET VRDVAFLHND QFFAAAQKKY AYIYGRDGTE LHCLKERGPV
201: ARLRFLKNHF LLASVNMSGQ LHYQDVTHGG MVASIRTGKG RTDVMEVNPY NSVVGLGHSG GTVTMWKPTS QAPLVQMQCH PGPVSSVAFH PNGHLMATSG
301: KERKIKIWDL RKFEEVQTIH SFHAKTLSFS QKGLLAAGTG SFVQILGDSS GGSSHNYTRY MNHSMVKGYQ IEKVMFRPYE DVIGIGHSMG WSSILIPGSG
401: EPNFDSWVAN PFETSKQRRE KEVHSLLDKL PPETIMLDPS KIGAMRPSRR KEKPSRGEIE AEKEVAIEAA KSTELKNKTK GRNKPSKRTK KKKEMVENAK
501: RTFPEQEHNT AIKKRRIVED AAAELPTSLK RFARKN

Arabidopsis Description

F18K10.11 protein [Source:UniProtKB/TrEMBL;Acc:Q9LPP3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.