CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY03088
CDY17621

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10530.1	CDY03088	AT2G01950.1	19000166
AT3G10530.1	CDY17621	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029849.1-P	Field mustard	nucleus	91.77	99.8
CDY00951	Canola	plastid	90.13	89.47
CDY71163	Canola	nucleus	86.65	88.43
CDY41358	Canola	nucleus	86.47	88.25
AT3G10530.1	Thale cress	nucleus	81.72	83.4
PGSC0003DMT400078468	Potato	nucleus	61.43	66.53
Solyc05g008190.2.1	Tomato	nucleus	63.07	65.46
KRH34701	Soybean	nucleus	63.62	65.05
VIT_13s0074g00030.t01	Wine grape	nucleus	63.62	64.93
KRG92087	Soybean	nucleus	63.07	64.49
GSMUA_Achr6P16550_001	Banana	cytosol	60.69	62.41
EER88999	Sorghum	nucleus	55.21	59.22
EES05140	Sorghum	nucleus	56.12	58.48
Os01t0183100-01	Rice	nucleus	56.31	57.68
HORVU2Hr1G046230.4	Barley	cytosol	10.42	57.58
Zm00001d036359_P001	Maize	nucleus	53.56	57.56
HORVU4Hr1G011790.3	Barley	cytosol	54.3	55.93
TraesCS1D01G385600.1	Wheat	nucleus	52.83	54.84
TraesCS4B01G070900.1	Wheat	cytosol	53.2	54.8
TraesCS4D01G069800.1	Wheat	cytosol	53.2	54.8
TraesCS4A01G244000.2	Wheat	nucleus	52.83	54.43
TraesCS1B01G399700.1	Wheat	nucleus	52.83	54.12
HORVU2Hr1G124260.1	Barley	plastid	54.11	51.21
HORVU7Hr1G050690.1	Barley	cytosol, extracellular, nucleus	3.47	41.3
HORVU6Hr1G037120.1	Barley	cytosol, nucleus, plastid	5.3	39.19
HORVU5Hr1G075250.1	Barley	cytosol	3.29	39.13
HORVU4Hr1G011830.1	Barley	cytosol, mitochondrion, nucleus	6.58	38.3
HORVU6Hr1G016260.1	Barley	cytosol	5.12	37.84
HORVU7Hr1G043570.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	4.94	36.49

Protein Annotations

MapMan:17.1.3.2.1.11	Gene3D:2.130.10.10	UniProt:A0A078F2A6	InterPro:BING4_C_dom	EnsemblPlants:CDY08595	ProteinID:CDY08595
ProteinID:CDY08595.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00000386001	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	PFAM:PD023243	PFAM:PF00400	PFAM:PF08149	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR14085	SMART:SM00320	SMART:SM01033	SUPFAM:SSF50978	UniParc:UPI0004EF3F7B
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

BnaA05g28310DBnaA05g28310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F2A6]

Coordinates

chrLK031986:-:842877..845709

Molecular Weight (calculated)

61905.9 Da

IEP (calculated)

10.273

GRAVY (calculated)

-0.618

Length

547 amino acids

Sequence
(BLAST)

001: MASSEHALTY LKTLHRRRVL FLPHRRRLKS QTHASQVKAN SKVIMEVALE DNSLMDKVLP PDEQEIDVEL EAKEKKYLRG EGANLETLKD KKLKTQLASR
101: EKLYGKSAKA AAKIEKWLLP ASAGYLETDG LEKTWRVKQT DIAKEVDILS SRNQYDIVLP DFGPYKLDFT ASGRHMLAGG RKGHLALVDM MSMNLIKEIQ
201: VRETVRDVAF LHNDQFFAAA QKKYSYIYAR DGTELHCLKE RGPVARLRFL KNHFLLASVN KIGQLHYQDV TYGDMVASIR TGKGRTDVME VNPYNGVVAL
301: GHSGGTVTMW KPTSQAPLVQ MQCHPGPVSS LAFHHNGHLM ATSGKERKLK IWDLRKFEEV LGDSSGDYSR YMSHSMVKGY QIEKVMFRPY EDVLGIGHSM
401: GWSSVLIPGS GEPNFDSWVA NPFETTKQRR EKEVHLLLDK LPPETIMLDP SKIGAMRPSR RKERLTRGEI EAEKEVAVEA AKGVELKKKT KGRNKPSKRT
501: KKKKELVENA KRTFPEQENS AAGKKRRIGE DAAAELPACL KRFARKN

Best Arabidopsis Sequence Match ( AT3G10530.1 )
(BLAST)

001: MEISSEDNNL MEKVLPPVEQ ESDVELETKV KKYLRGEGAN LETLKDKKLK TQLASREKLY GKSAKAAAKI EKWLLPAEAG YLETEGLEKT WRVKQTDIAN
101: EVDILSSRNQ YDIVLPDFGP YKLDFTASGR HMLAGGRKGH LALLDMMNMS LIKEIQVRET VRDVAFLHND QFFAAAQKKY AYIYGRDGTE LHCLKERGPV
201: ARLRFLKNHF LLASVNMSGQ LHYQDVTHGG MVASIRTGKG RTDVMEVNPY NSVVGLGHSG GTVTMWKPTS QAPLVQMQCH PGPVSSVAFH PNGHLMATSG
301: KERKIKIWDL RKFEEVQTIH SFHAKTLSFS QKGLLAAGTG SFVQILGDSS GGSSHNYTRY MNHSMVKGYQ IEKVMFRPYE DVIGIGHSMG WSSILIPGSG
401: EPNFDSWVAN PFETSKQRRE KEVHSLLDKL PPETIMLDPS KIGAMRPSRR KEKPSRGEIE AEKEVAIEAA KSTELKNKTK GRNKPSKRTK KKKEMVENAK
501: RTFPEQEHNT AIKKRRIVED AAAELPTSLK RFARKN

Arabidopsis Description

F18K10.11 protein [Source:UniProtKB/TrEMBL;Acc:Q9LPP3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.