CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY03088
CDY17621

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10530.1	CDY03088	AT2G01950.1	19000166
AT3G10530.1	CDY17621	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71163	Canola	nucleus	99.44	99.44
Bra034124.1-P	Field mustard	nucleus	98.88	98.88
AT3G10530.1	Thale cress	nucleus	89.18	89.18
CDY08595	Canola	mitochondrion, nucleus	88.25	86.47
CDY00951	Canola	plastid	88.81	86.39
PGSC0003DMT400078468	Potato	nucleus	67.91	72.08
Solyc05g008190.2.1	Tomato	nucleus	69.78	70.97
VIT_13s0074g00030.t01	Wine grape	nucleus	70.34	70.34
KRH34701	Soybean	nucleus	68.28	68.41
KRG92087	Soybean	nucleus	68.1	68.22
GSMUA_Achr6P16550_001	Banana	cytosol	64.55	65.04
EER88999	Sorghum	nucleus	58.96	61.96
EES05140	Sorghum	nucleus	59.7	60.95
Zm00001d036359_P001	Maize	nucleus	57.09	60.12
Os01t0183100-01	Rice	nucleus	59.7	59.93
HORVU4Hr1G011790.3	Barley	cytosol	58.02	58.57
TraesCS1D01G385600.1	Wheat	nucleus	56.53	57.5
TraesCS4B01G070900.1	Wheat	cytosol	56.9	57.44
TraesCS4D01G069800.1	Wheat	cytosol	56.9	57.44
TraesCS4A01G244000.2	Wheat	nucleus	56.53	57.06
TraesCS1B01G399700.1	Wheat	nucleus	56.53	56.74
HORVU2Hr1G046230.4	Barley	cytosol	10.26	55.56
HORVU2Hr1G124260.1	Barley	plastid	57.46	53.29
HORVU4Hr1G011830.1	Barley	cytosol, mitochondrion, nucleus	9.14	52.13
HORVU7Hr1G050690.1	Barley	cytosol, extracellular, nucleus	3.17	36.96
HORVU6Hr1G037120.1	Barley	cytosol, nucleus, plastid	5.04	36.49
HORVU6Hr1G016260.1	Barley	cytosol	4.85	35.14
HORVU5Hr1G075250.1	Barley	cytosol	2.99	34.78
HORVU7Hr1G043570.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	4.66	33.78

Protein Annotations

MapMan:17.1.3.2.1.11	Gene3D:2.130.10.10	UniProt:A0A078HX76	InterPro:BING4_C_dom	EnsemblPlants:CDY41358	ProteinID:CDY41358
ProteinID:CDY41358.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00072919001	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	PFAM:PD023243	PFAM:PF00400	PFAM:PF08149	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR14085	SMART:SM00320	SMART:SM01033	SUPFAM:SSF50978	UniParc:UPI0004EDFF94
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

BnaA01g31610DBnaA01g31610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HX76]

Coordinates

chrLK032495:+:261720..264414

Molecular Weight (calculated)

60119.7 Da

IEP (calculated)

10.129

GRAVY (calculated)

-0.588

Length

536 amino acids

Sequence
(BLAST)

001: MEVALEDNNL MEKVLPPDEQ EIDVELEAKE KKYLRGEGAN LESLKDKKLK TQLASREKLY GKSAKAAAKI EKWLLPASAG YLETEGLEKT WRIKQTDIAK
101: EVDLLSSKNQ YDIVLPDFGP YKLDFTASGR HMLAGGRKGH LALVDMMNMN LIKEIHVRET VRDVAFLHND QFFAAAQKKY SYIYARDGTE LHCLKERGPV
201: ARLRFLKNHF LLASINKIGQ LHYQDVTYGD MVASIRTGKG RTDVMEVNPY NGVVALGHSG GTVTMWKPTS QAPLVQMQCH PGPVSAVAFH PNGHLMATSG
301: KERKVKIWDL RKFEEVQTIH GFHAKTLSFS QKGLLAAGTG SFVQVLGDSN GGGGGYSRYM SHSMVKGYQV EKVMFRPYED VLGIGHSMGW SSVLIPGSGE
401: PNFDSWVANP FETSKQRREK EVHLLLDKLP PETIMLDPSK IGAMRPSRRK ERPTRGEIEA EKEVAIEAAK SVEMKKKTKG RNKPSKRTKK KKEMVENAKK
501: TFPELEHSNI AGKKRRIGED AATELPTSLK RFARKN

Best Arabidopsis Sequence Match ( AT3G10530.1 )
(BLAST)

001: MEISSEDNNL MEKVLPPVEQ ESDVELETKV KKYLRGEGAN LETLKDKKLK TQLASREKLY GKSAKAAAKI EKWLLPAEAG YLETEGLEKT WRVKQTDIAN
101: EVDILSSRNQ YDIVLPDFGP YKLDFTASGR HMLAGGRKGH LALLDMMNMS LIKEIQVRET VRDVAFLHND QFFAAAQKKY AYIYGRDGTE LHCLKERGPV
201: ARLRFLKNHF LLASVNMSGQ LHYQDVTHGG MVASIRTGKG RTDVMEVNPY NSVVGLGHSG GTVTMWKPTS QAPLVQMQCH PGPVSSVAFH PNGHLMATSG
301: KERKIKIWDL RKFEEVQTIH SFHAKTLSFS QKGLLAAGTG SFVQILGDSS GGSSHNYTRY MNHSMVKGYQ IEKVMFRPYE DVIGIGHSMG WSSILIPGSG
401: EPNFDSWVAN PFETSKQRRE KEVHSLLDKL PPETIMLDPS KIGAMRPSRR KEKPSRGEIE AEKEVAIEAA KSTELKNKTK GRNKPSKRTK KKKEMVENAK
501: RTFPEQEHNT AIKKRRIVED AAAELPTSLK RFARKN

Arabidopsis Description

F18K10.11 protein [Source:UniProtKB/TrEMBL;Acc:Q9LPP3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.