Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU3Hr1G018030.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G10530.1 | HORVU3Hr1G018030.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G046230.4 | Barley | cytosol | 17.89 | 95.96 |
| TraesCS4D01G069800.1 | Wheat | cytosol | 95.29 | 95.29 |
| TraesCS4B01G070900.1 | Wheat | cytosol | 94.35 | 94.35 |
| TraesCS4A01G244000.2 | Wheat | nucleus | 93.97 | 93.97 |
| HORVU2Hr1G124260.1 | Barley | plastid | 95.29 | 87.54 |
| HORVU4Hr1G011830.1 | Barley | cytosol, mitochondrion, nucleus | 14.69 | 82.98 |
| GSMUA_Achr6P16550_001 | Banana | cytosol | 70.24 | 70.11 |
| PGSC0003DMT400078468 | Potato | nucleus | 60.08 | 63.17 |
| VIT_13s0074g00030.t01 | Wine grape | nucleus | 63.28 | 62.69 |
| HORVU6Hr1G037120.1 | Barley | cytosol, nucleus, plastid | 8.66 | 62.16 |
| KRG92087 | Soybean | nucleus | 62.52 | 62.06 |
| KRH34701 | Soybean | nucleus | 62.34 | 61.87 |
| Solyc05g008190.2.1 | Tomato | nucleus | 61.02 | 61.48 |
| HORVU7Hr1G050690.1 | Barley | cytosol, extracellular, nucleus | 5.27 | 60.87 |
| HORVU6Hr1G016260.1 | Barley | cytosol | 8.47 | 60.81 |
| AT3G10530.1 | Thale cress | nucleus | 60.83 | 60.26 |
| HORVU7Hr1G043570.1 | Barley | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 8.29 | 59.46 |
| Bra029849.1-P | Field mustard | nucleus | 55.93 | 59.05 |
| HORVU5Hr1G075250.1 | Barley | cytosol | 5.08 | 58.7 |
| CDY41358 | Canola | nucleus | 58.57 | 58.02 |
| CDY71163 | Canola | nucleus | 58.38 | 57.84 |
| Bra034124.1-P | Field mustard | nucleus | 58.38 | 57.84 |
| CDY08595 | Canola | mitochondrion, nucleus | 55.93 | 54.3 |
| CDY00951 | Canola | plastid | 55.56 | 53.54 |
Protein Annotations
| MapMan:17.1.3.2.1.11 | Gene3D:2.130.10.10 | UniProt:A0A287N8E6 | InterPro:BING4_C_dom | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:HORVU4Hr1G011790 | EnsemblPlants:HORVU4Hr1G011790.3 | InterPro:IPR001680 | InterPro:IPR015943 |
| InterPro:IPR017986 | PFAM:PD023243 | PFAM:PF00400 | PFAM:PF08149 | ScanProsite:PS00678 | PFscan:PS50082 |
| PFscan:PS50294 | PANTHER:PTHR14085 | SMART:SM00320 | SMART:SM01033 | SUPFAM:SSF50978 | UniParc:UPI000B47A775 |
| InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg |
Description
No Description!
Coordinates
chrchr4H:-:37206334..37212513
Molecular Weight (calculated)
59761.6 Da
IEP (calculated)
10.184
GRAVY (calculated)
-0.598
Length
531 amino acids
Sequence
(BLAST)
(BLAST)
001: MGIAAAEDPK ETKNHQNSLD EMEMKVVKFS RGKAANLAAL RDKKLKGQLA GKEKLIGISA KAAAQAEKWF LPIEGGYLEP EGLEKTYRYT QQELGSSVDI
101: LSSRKPFDMI LPELGPYTLE YTSNGRYMIV GGRKGHIGMM DMLSMDLIKE FQVRETVRDV AFLHNEQLFA VAQKKYPYIY NRHGTEIHCL KEHGKALKLQ
201: FLDKHFLLAS INSFGQLHYQ DMSTGEMIAN HRTGLGRTDV MRVNPYNAVI GLGHAGGKVT MWKPTSVKPL VTMLCHNGPV KAVAFERGGH LMATAGVDKK
301: IKIWDLRKYE VVHTHPARAE SLDFSQKGLL AASNGSLVEV YRDAGGHDYK IYMKHRMVKG YQIGKVLFRP YEDICSIGHS MGFSSILVPG SGEANFDTFV
401: ENPVETAKQR REREVHALLN KLQPETVMLN PNMIGNVRQP KKKEKKTKKE VEEEIEDAVE AAKSTKVKNK TKGRSKPSKR AKKKEEEVLR AKRPLLDQYK
501: EIGGNPEKKQ RVGDKAELPK ALQRFAKNKQ S
101: LSSRKPFDMI LPELGPYTLE YTSNGRYMIV GGRKGHIGMM DMLSMDLIKE FQVRETVRDV AFLHNEQLFA VAQKKYPYIY NRHGTEIHCL KEHGKALKLQ
201: FLDKHFLLAS INSFGQLHYQ DMSTGEMIAN HRTGLGRTDV MRVNPYNAVI GLGHAGGKVT MWKPTSVKPL VTMLCHNGPV KAVAFERGGH LMATAGVDKK
301: IKIWDLRKYE VVHTHPARAE SLDFSQKGLL AASNGSLVEV YRDAGGHDYK IYMKHRMVKG YQIGKVLFRP YEDICSIGHS MGFSSILVPG SGEANFDTFV
401: ENPVETAKQR REREVHALLN KLQPETVMLN PNMIGNVRQP KKKEKKTKKE VEEEIEDAVE AAKSTKVKNK TKGRSKPSKR AKKKEEEVLR AKRPLLDQYK
501: EIGGNPEKKQ RVGDKAELPK ALQRFAKNKQ S
001: MEISSEDNNL MEKVLPPVEQ ESDVELETKV KKYLRGEGAN LETLKDKKLK TQLASREKLY GKSAKAAAKI EKWLLPAEAG YLETEGLEKT WRVKQTDIAN
101: EVDILSSRNQ YDIVLPDFGP YKLDFTASGR HMLAGGRKGH LALLDMMNMS LIKEIQVRET VRDVAFLHND QFFAAAQKKY AYIYGRDGTE LHCLKERGPV
201: ARLRFLKNHF LLASVNMSGQ LHYQDVTHGG MVASIRTGKG RTDVMEVNPY NSVVGLGHSG GTVTMWKPTS QAPLVQMQCH PGPVSSVAFH PNGHLMATSG
301: KERKIKIWDL RKFEEVQTIH SFHAKTLSFS QKGLLAAGTG SFVQILGDSS GGSSHNYTRY MNHSMVKGYQ IEKVMFRPYE DVIGIGHSMG WSSILIPGSG
401: EPNFDSWVAN PFETSKQRRE KEVHSLLDKL PPETIMLDPS KIGAMRPSRR KEKPSRGEIE AEKEVAIEAA KSTELKNKTK GRNKPSKRTK KKKEMVENAK
501: RTFPEQEHNT AIKKRRIVED AAAELPTSLK RFARKN
101: EVDILSSRNQ YDIVLPDFGP YKLDFTASGR HMLAGGRKGH LALLDMMNMS LIKEIQVRET VRDVAFLHND QFFAAAQKKY AYIYGRDGTE LHCLKERGPV
201: ARLRFLKNHF LLASVNMSGQ LHYQDVTHGG MVASIRTGKG RTDVMEVNPY NSVVGLGHSG GTVTMWKPTS QAPLVQMQCH PGPVSSVAFH PNGHLMATSG
301: KERKIKIWDL RKFEEVQTIH SFHAKTLSFS QKGLLAAGTG SFVQILGDSS GGSSHNYTRY MNHSMVKGYQ IEKVMFRPYE DVIGIGHSMG WSSILIPGSG
401: EPNFDSWVAN PFETSKQRRE KEVHSLLDKL PPETIMLDPS KIGAMRPSRR KEKPSRGEIE AEKEVAIEAA KSTELKNKTK GRNKPSKRTK KKKEMVENAK
501: RTFPEQEHNT AIKKRRIVED AAAELPTSLK RFARKN
Arabidopsis Description
F18K10.11 protein [Source:UniProtKB/TrEMBL;Acc:Q9LPP3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.