Factsheet for Bra029849.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra024839.1-P
Bra024840.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10530.1	Bra024839.1-P	AT2G01950.1	19000166
AT3G10530.1	Bra024840.1-P	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08595	Canola	mitochondrion, nucleus	99.8	91.77
Bra034124.1-P	Field mustard	nucleus	94.83	88.99
AT3G10530.1	Thale cress	nucleus	89.07	83.58
PGSC0003DMT400078468	Potato	nucleus	67.0	66.73
Solyc05g008190.2.1	Tomato	nucleus	68.79	65.65
VIT_13s0074g00030.t01	Wine grape	nucleus	69.38	65.11
KRH34701	Soybean	nucleus	69.18	65.05
KRG92087	Soybean	nucleus	68.59	64.49
GSMUA_Achr6P16550_001	Banana	cytosol	66.0	62.41
EER88999	Sorghum	nucleus	60.04	59.22
EES05140	Sorghum	nucleus	61.03	58.48
Os01t0183100-01	Rice	nucleus	61.23	57.68
HORVU2Hr1G046230.4	Barley	cytosol	11.33	57.58
Zm00001d036359_P001	Maize	nucleus	58.25	57.56
HORVU4Hr1G011790.3	Barley	cytosol	59.05	55.93
TraesCS1D01G385600.1	Wheat	nucleus	57.46	54.84
TraesCS4B01G070900.1	Wheat	cytosol	57.85	54.8
TraesCS4D01G069800.1	Wheat	cytosol	57.85	54.8
TraesCS4A01G244000.2	Wheat	nucleus	57.46	54.43
TraesCS1B01G399700.1	Wheat	nucleus	57.46	54.12
HORVU2Hr1G124260.1	Barley	plastid	58.25	50.69
HORVU7Hr1G050690.1	Barley	cytosol, extracellular, nucleus	3.78	41.3
HORVU6Hr1G037120.1	Barley	cytosol, nucleus, plastid	5.77	39.19
HORVU5Hr1G075250.1	Barley	cytosol	3.58	39.13
HORVU4Hr1G011830.1	Barley	cytosol, mitochondrion, nucleus	7.16	38.3
HORVU6Hr1G016260.1	Barley	cytosol	5.57	37.84
HORVU7Hr1G043570.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	5.37	36.49

Protein Annotations

MapMan:17.1.3.2.1.11	Gene3D:2.130.10.10	InterPro:BING4_C_dom	EnsemblPlantsGene:Bra029849	EnsemblPlants:Bra029849.1	EnsemblPlants:Bra029849.1-P
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:M4EM29	PFAM:PD023243	PFAM:PF00400	PFAM:PF08149	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR14085	SMART:SM00320	SMART:SM01033	SUPFAM:SSF50978	UniParc:UPI0002547949	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

AT3G10530 (E=2e-169) | transducin family protein / WD-40 repeat family protein

Coordinates

chrA05:-:21992983..21995229

Molecular Weight (calculated)

56716.5 Da

IEP (calculated)

10.000

GRAVY (calculated)

-0.616

Length

503 amino acids

Sequence
(BLAST)

001: MEVALEDNSL MDKVLPPDEQ EIDVELEAKE KKYLRGEGAN LETLKDKKLK TQLASREKLY GKSAKAAAKI EKWLLPASAG YLETDGLEKT WRVKQTDIAK
101: EVDILSSRNQ YDIVLPDFGP YKLDFTASGR HMLAGGRKGH LALVDMMSMN LIKEIQVRET VRDVAFLHND QFFAAAQKKY SYIYARDGTE LHCLKERGPV
201: ARLRFLKNHF LLASVNKIGQ LHYQDVTYGD MVASIRTGKG RTDVMEVNPY NGVVALGHSG GTVTMWKPTS QAPLVQMQCH PGPVSSLAFH PNGHLMATSG
301: KERKLKIWDL RKFEEVLGDS SGDYSRYMSH SMVKGYQIEK VMFRPYEDVL GIGHSMGWSS VLIPGSGEPN FDSWVANPFE TTKQRREKEV HLLLDKLPPE
401: TIMLDPSKIG AMRPSRRKER LTRGEIEAEK EVAVEAAKGV ELKKKTKGRN KPSKRTKKKK ELVENAKRTF PEQENSAAGK KRRIGEDAAA ELPACLKRFA
501: RKN

Best Arabidopsis Sequence Match ( AT3G10530.1 )
(BLAST)

001: MEISSEDNNL MEKVLPPVEQ ESDVELETKV KKYLRGEGAN LETLKDKKLK TQLASREKLY GKSAKAAAKI EKWLLPAEAG YLETEGLEKT WRVKQTDIAN
101: EVDILSSRNQ YDIVLPDFGP YKLDFTASGR HMLAGGRKGH LALLDMMNMS LIKEIQVRET VRDVAFLHND QFFAAAQKKY AYIYGRDGTE LHCLKERGPV
201: ARLRFLKNHF LLASVNMSGQ LHYQDVTHGG MVASIRTGKG RTDVMEVNPY NSVVGLGHSG GTVTMWKPTS QAPLVQMQCH PGPVSSVAFH PNGHLMATSG
301: KERKIKIWDL RKFEEVQTIH SFHAKTLSFS QKGLLAAGTG SFVQILGDSS GGSSHNYTRY MNHSMVKGYQ IEKVMFRPYE DVIGIGHSMG WSSILIPGSG
401: EPNFDSWVAN PFETSKQRRE KEVHSLLDKL PPETIMLDPS KIGAMRPSRR KEKPSRGEIE AEKEVAIEAA KSTELKNKTK GRNKPSKRTK KKKEMVENAK
501: RTFPEQEHNT AIKKRRIVED AAAELPTSLK RFARKN

Arabidopsis Description

F18K10.11 protein [Source:UniProtKB/TrEMBL;Acc:Q9LPP3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.