CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU92006

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10530.1	OQU92006	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER88999	Sorghum	nucleus	93.14	95.88
Zm00001d036359_P001	Maize	nucleus	89.52	92.34
Os01t0183100-01	Rice	nucleus	80.95	79.59
TraesCS1D01G385600.1	Wheat	nucleus	77.33	77.04
TraesCS1B01G399700.1	Wheat	nucleus	77.14	75.84
GSMUA_Achr6P16550_001	Banana	cytosol	73.71	72.74
HORVU2Hr1G046230.4	Barley	cytosol	13.33	70.71
PGSC0003DMT400078468	Potato	nucleus	62.86	65.35
VIT_13s0074g00030.t01	Wine grape	nucleus	64.76	63.43
Solyc05g008190.2.1	Tomato	nucleus	63.62	63.38
Bra029849.1-P	Field mustard	nucleus	58.48	61.03
KRG92087	Soybean	nucleus	61.9	60.75
KRH34701	Soybean	nucleus	61.71	60.56
AT3G10530.1	Thale cress	nucleus	61.52	60.26
CDY41358	Canola	nucleus	60.95	59.7
Bra034124.1-P	Field mustard	nucleus	60.95	59.7
CDY71163	Canola	nucleus	60.76	59.51
CDY08595	Canola	mitochondrion, nucleus	58.48	56.12
CDY00951	Canola	plastid	57.9	55.17
HORVU7Hr1G050690.1	Barley	cytosol, extracellular, nucleus	4.57	52.17
HORVU5Hr1G075250.1	Barley	cytosol	4.38	50.0
HORVU6Hr1G037120.1	Barley	cytosol, nucleus, plastid	6.86	48.65
HORVU6Hr1G016260.1	Barley	cytosol	6.67	47.3
HORVU7Hr1G043570.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	6.48	45.95

Protein Annotations

MapMan:17.1.3.2.1.11	Gene3D:2.130.10.10	EntrezGene:8059589	InterPro:BING4_C_dom	UniProt:C5XSP0	ncoils:Coil
EnsemblPlants:EES05140	ProteinID:EES05140	ProteinID:EES05140.1	GO:GO:0000462	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030686	GO:GO:0032040
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PD023243	PFAM:PF00400	PFAM:PF08149
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR14085	SMART:SM00320	SMART:SM01033
EnsemblPlantsGene:SORBI_3004G157400	SUPFAM:SSF50978	unigene:Sbi.9178	UniParc:UPI0001A8566E	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002452164.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:+:49906689..49914808

Molecular Weight (calculated)

59556.4 Da

IEP (calculated)

10.126

GRAVY (calculated)

-0.629

Length

525 amino acids

Sequence
(BLAST)

001: MAPARVDAEK EAQHELEVKV AKYSRGQGAD LKALGDKKLK GQLSVKEKLY GQSAKAAAKA EKWLMPNDGG ILEPDHLEKT YRFSQRDILT EVDLLSSRKP
101: FDMILPVLGP YNIGYTPNGR YMLVGGRKGH LAMMDMLHMD LIKEFEVRET VRDVTFLHNE QLYAVAQKKY PYIYNRHGTE IHCLKEHGKA LKLQFLSKQF
201: LLASINSFGQ LHYQDVSTGE MVANYRTGLG RTDVMRANPY NAVIGLGHAG GKVTMWKPTS VKPLVTMLCH HGPVTAVAFD RGGHLMATAG VDRKIKIWDL
301: RKYEVVRSYP QRAQSLDFSQ KGLLACSNGS QVEIYRDFGG HDYKLYMKHR ILKGYQVGKV LFRPYEDILG IGHSMGFSSI LVPGSGEPNF DTFVDNPMET
401: TKQKREKEVH ALLDKLPPET IMLNPNMIAT VRAPKKKEKK TKKEIEEEMD DAIEAAKNIE RKKKTKGRSK PSKRAKKKEE DVFKAKRPFL EQSEEINGRP
501: DKKQRIGEEV ELPKALQRFA KKPQS

Best Arabidopsis Sequence Match ( AT3G10530.1 )
(BLAST)

001: MEISSEDNNL MEKVLPPVEQ ESDVELETKV KKYLRGEGAN LETLKDKKLK TQLASREKLY GKSAKAAAKI EKWLLPAEAG YLETEGLEKT WRVKQTDIAN
101: EVDILSSRNQ YDIVLPDFGP YKLDFTASGR HMLAGGRKGH LALLDMMNMS LIKEIQVRET VRDVAFLHND QFFAAAQKKY AYIYGRDGTE LHCLKERGPV
201: ARLRFLKNHF LLASVNMSGQ LHYQDVTHGG MVASIRTGKG RTDVMEVNPY NSVVGLGHSG GTVTMWKPTS QAPLVQMQCH PGPVSSVAFH PNGHLMATSG
301: KERKIKIWDL RKFEEVQTIH SFHAKTLSFS QKGLLAAGTG SFVQILGDSS GGSSHNYTRY MNHSMVKGYQ IEKVMFRPYE DVIGIGHSMG WSSILIPGSG
401: EPNFDSWVAN PFETSKQRRE KEVHSLLDKL PPETIMLDPS KIGAMRPSRR KEKPSRGEIE AEKEVAIEAA KSTELKNKTK GRNKPSKRTK KKKEMVENAK
501: RTFPEQEHNT AIKKRRIVED AAAELPTSLK RFARKN

Arabidopsis Description

F18K10.11 protein [Source:UniProtKB/TrEMBL;Acc:Q9LPP3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.