Factsheet for GSMUA_Achr6P16550_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P15100_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10530.1	GSMUA_Achr2P15100_001	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER88999	Sorghum	nucleus	71.62	74.71
EES05140	Sorghum	nucleus	72.74	73.71
Zm00001d036359_P001	Maize	nucleus	70.49	73.67
Os01t0183100-01	Rice	nucleus	71.43	71.16
HORVU4Hr1G011790.3	Barley	cytosol	70.11	70.24
TraesCS4D01G069800.1	Wheat	cytosol	68.61	68.74
HORVU2Hr1G046230.4	Barley	cytosol	12.78	68.69
VIT_13s0074g00030.t01	Wine grape	nucleus	69.17	68.66
TraesCS4A01G244000.2	Wheat	nucleus	68.23	68.36
TraesCS4B01G070900.1	Wheat	cytosol	68.05	68.17
KRH34701	Soybean	nucleus	68.42	68.04
KRG92087	Soybean	nucleus	68.42	68.04
PGSC0003DMT400078468	Potato	nucleus	64.47	67.92
TraesCS1D01G385600.1	Wheat	nucleus	66.92	67.55
Solyc05g008190.2.1	Tomato	nucleus	66.54	67.17
TraesCS1B01G399700.1	Wheat	nucleus	67.11	66.85
Bra029849.1-P	Field mustard	nucleus	62.41	66.0
AT3G10530.1	Thale cress	nucleus	65.6	65.11
CDY41358	Canola	nucleus	65.04	64.55
CDY71163	Canola	nucleus	64.85	64.37
Bra034124.1-P	Field mustard	nucleus	64.85	64.37
HORVU2Hr1G124260.1	Barley	plastid	69.36	63.84
CDY08595	Canola	mitochondrion, nucleus	62.41	60.69
CDY00951	Canola	plastid	62.03	59.89
HORVU4Hr1G011830.1	Barley	cytosol, mitochondrion, nucleus	9.96	56.38
HORVU7Hr1G050690.1	Barley	cytosol, extracellular, nucleus	4.7	54.35
HORVU5Hr1G075250.1	Barley	cytosol	4.51	52.17
HORVU6Hr1G037120.1	Barley	cytosol, nucleus, plastid	7.14	51.35
HORVU6Hr1G016260.1	Barley	cytosol	6.95	50.0
HORVU7Hr1G043570.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	6.77	48.65

Protein Annotations

MapMan:17.1.3.2.1.11	Gene3D:2.130.10.10	InterPro:BING4_C_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSMUA_Achr6G16550_001	EnsemblPlants:GSMUA_Achr6P16550_001	EnsemblPlants:GSMUA_Achr6T16550_001	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:M0T7K3	PFAM:PD023243	PFAM:PF00400	PFAM:PF08149	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR14085	SMART:SM00320	SMART:SM01033	SUPFAM:SSF50978	UniParc:UPI0002960B06
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

Putative Probable U3 small nucleolar RNA-associated protein 7 [Source:GMGC_GENE;Acc:GSMUA_Achr6G16550_001]

Coordinates

chr6:-:11014591..11020798

Molecular Weight (calculated)

60603.5 Da

IEP (calculated)

10.087

GRAVY (calculated)

-0.596

Length

532 amino acids

Sequence
(BLAST)

001: MAANQEIMDK DRLVTTTEQD MSDELNLKTR KYLRGDGANL ETLRDKKLKG QLAVREKLYS QSAKAAAKAE KWLMPTDEGY LEPEGLEKTW MVKQESIIHE
101: VDVISSRKPF DMILPELGPY NLQYASSGRY MLVGGRKGHL AMMDMMSMDL IKEFQVRETV RDVVFLHNEQ FFAVAQKKYP YIYNRHGTEI HCLEEHGAPL
201: KLQFLDKHFL LASVNKFAQL HYQDVSTGVI VANYRTGLGR TDVMRVNPYN AVIGLGHSGG KVTMWKPTSV KPLVTMLCHH GPVTAVAFHS GGQLMATAGM
301: DRKIKLWDLR KFGVLNTYSG HAQTMDFSQK GLLAIGYGSR VQVWRDSGNQ EYEKYMSHAM VKGYQIGKVS FRPYEDVLGI GHSMGISSIL IPGSGEPNFD
401: TWVANPYETT KQRREKEVHA LLDKLQPETI MLEPSKIGTV RPPRRKERPT KKETEEEMET AVEAAKSITF KKKTKGRNKP SKRAAKKEEE VFKAKRPFLE
501: QQMNNDRPLK KQRIAEAELP KALQRFSRKK VS

Best Arabidopsis Sequence Match ( AT3G10530.1 )
(BLAST)

001: MEISSEDNNL MEKVLPPVEQ ESDVELETKV KKYLRGEGAN LETLKDKKLK TQLASREKLY GKSAKAAAKI EKWLLPAEAG YLETEGLEKT WRVKQTDIAN
101: EVDILSSRNQ YDIVLPDFGP YKLDFTASGR HMLAGGRKGH LALLDMMNMS LIKEIQVRET VRDVAFLHND QFFAAAQKKY AYIYGRDGTE LHCLKERGPV
201: ARLRFLKNHF LLASVNMSGQ LHYQDVTHGG MVASIRTGKG RTDVMEVNPY NSVVGLGHSG GTVTMWKPTS QAPLVQMQCH PGPVSSVAFH PNGHLMATSG
301: KERKIKIWDL RKFEEVQTIH SFHAKTLSFS QKGLLAAGTG SFVQILGDSS GGSSHNYTRY MNHSMVKGYQ IEKVMFRPYE DVIGIGHSMG WSSILIPGSG
401: EPNFDSWVAN PFETSKQRRE KEVHSLLDKL PPETIMLDPS KIGAMRPSRR KEKPSRGEIE AEKEVAIEAA KSTELKNKTK GRNKPSKRTK KKKEMVENAK
501: RTFPEQEHNT AIKKRRIVED AAAELPTSLK RFARKN

Arabidopsis Description

F18K10.11 protein [Source:UniProtKB/TrEMBL;Acc:Q9LPP3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.