CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 3
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU92006

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10530.1	OQU92006	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05140	Sorghum	nucleus	95.88	93.14
Zm00001d036359_P001	Maize	nucleus	92.35	92.53
Os01t0183100-01	Rice	nucleus	81.37	77.72
TraesCS1D01G385600.1	Wheat	nucleus	78.43	75.9
TraesCS1B01G399700.1	Wheat	nucleus	78.04	74.53
GSMUA_Achr6P16550_001	Banana	cytosol	74.71	71.62
HORVU2Hr1G046230.4	Barley	cytosol	13.73	70.71
PGSC0003DMT400078468	Potato	nucleus	64.51	65.15
Solyc05g008190.2.1	Tomato	nucleus	64.9	62.81
VIT_13s0074g00030.t01	Wine grape	nucleus	65.88	62.69
KRH34701	Soybean	nucleus	63.53	60.56
KRG92087	Soybean	nucleus	63.33	60.37
Bra029849.1-P	Field mustard	nucleus	59.22	60.04
AT3G10530.1	Thale cress	nucleus	62.55	59.51
CDY41358	Canola	nucleus	61.96	58.96
Bra034124.1-P	Field mustard	nucleus	61.96	58.96
CDY71163	Canola	nucleus	61.76	58.77
CDY08595	Canola	mitochondrion, nucleus	59.22	55.21
CDY00951	Canola	plastid	58.82	54.45
HORVU7Hr1G050690.1	Barley	cytosol, extracellular, nucleus	4.51	50.0
HORVU6Hr1G037120.1	Barley	cytosol, nucleus, plastid	7.25	50.0
HORVU6Hr1G016260.1	Barley	cytosol	7.06	48.65
HORVU5Hr1G075250.1	Barley	cytosol	4.31	47.83
HORVU7Hr1G043570.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	6.86	47.3

Protein Annotations

MapMan:17.1.3.2.1.11	Gene3D:2.130.10.10	EntrezGene:8066379	InterPro:BING4_C_dom	UniProt:C5Z2J7	ncoils:Coil
EnsemblPlants:EER88999	ProteinID:EER88999	ProteinID:EER88999.1	GO:GO:0000462	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0030686	GO:GO:0032040
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PD023243	PFAM:PF00400	PFAM:PF08149
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR14085	SMART:SM00320	SMART:SM01033
EnsemblPlantsGene:SORBI_3010G274600	SUPFAM:SSF50978	unigene:Sbi.21485	UniParc:UPI0001A898DF	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002437632.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr10:+:60785778..60791171

Molecular Weight (calculated)

57827.3 Da

IEP (calculated)

10.122

GRAVY (calculated)

-0.609

Length

510 amino acids

Sequence
(BLAST)

001: MEVEVAKYSR GQGADLKALR DKKLKGQLTV KEKLYGQSAK AAAKAEKWLM PNDGGILEPD HLEKTYRFSQ KDILTEVDLL SSRKPFDMIL PVLGPYHIGY
101: TSNGRYMLVG GRKGHLAMMD MLHMNLIKEF EVRETVRDVT FLHNEQLYAV AQKKYPYIYN QHGTEIHCLK EHGKALKLQF LSKQFLLASI NSFGQLHYQD
201: VSTGEMVANY RTGLGRTDVM QANPYNAVIG LGHAGGKVTM WKPTSVKPLV TMLCHHGPVT AVAFDRGGNL MATAGVDRKI KIWDLRKYEV VHSYPVRAQS
301: LDFSQKGLLA CSNGSQVEIY RDFGGHDYKL YMKHKIMKGY QVGKVLFRPY EDILGIGHSM GFSSILVPGS GEPNFDTFVD NPMETTKQKR EKEVHALLDK
401: LPPETIMLNP NTIATVRAPK KKEKKTKKEI EEEMEDAIEA AKNIERKKKT KGRSKPSKRA KKKEEDVFKA KRPFLEQSDK VDGRPDKKQR IGEEVELPKA
501: LQRFAKKPQS

Best Arabidopsis Sequence Match ( AT3G10530.1 )
(BLAST)

001: MEISSEDNNL MEKVLPPVEQ ESDVELETKV KKYLRGEGAN LETLKDKKLK TQLASREKLY GKSAKAAAKI EKWLLPAEAG YLETEGLEKT WRVKQTDIAN
101: EVDILSSRNQ YDIVLPDFGP YKLDFTASGR HMLAGGRKGH LALLDMMNMS LIKEIQVRET VRDVAFLHND QFFAAAQKKY AYIYGRDGTE LHCLKERGPV
201: ARLRFLKNHF LLASVNMSGQ LHYQDVTHGG MVASIRTGKG RTDVMEVNPY NSVVGLGHSG GTVTMWKPTS QAPLVQMQCH PGPVSSVAFH PNGHLMATSG
301: KERKIKIWDL RKFEEVQTIH SFHAKTLSFS QKGLLAAGTG SFVQILGDSS GGSSHNYTRY MNHSMVKGYQ IEKVMFRPYE DVIGIGHSMG WSSILIPGSG
401: EPNFDSWVAN PFETSKQRRE KEVHSLLDKL PPETIMLDPS KIGAMRPSRR KEKPSRGEIE AEKEVAIEAA KSTELKNKTK GRNKPSKRTK KKKEMVENAK
501: RTFPEQEHNT AIKKRRIVED AAAELPTSLK RFARKN

Arabidopsis Description

F18K10.11 protein [Source:UniProtKB/TrEMBL;Acc:Q9LPP3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.