Factsheet for TraesCS1D01G385600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G099400.1
TraesCS3B01G115800.1
TraesCS3D01G099700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G10530.1	TraesCS3A01G099400.1	AT2G01950.1	19000166
AT3G10530.1	TraesCS3B01G115800.1	AT2G01950.1	19000166
AT3G10530.1	TraesCS3D01G099700.1	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G399700.1	Wheat	nucleus	94.31	93.07
TraesCS4D01G069800.1	Wheat	cytosol	81.21	80.6
EER88999	Sorghum	nucleus	75.9	78.43
EES05140	Sorghum	nucleus	77.04	77.33
Os01t0183100-01	Rice	nucleus	77.61	76.59
Zm00001d036359_P001	Maize	nucleus	73.62	76.23
HORVU2Hr1G046230.4	Barley	cytosol	14.23	75.76
GSMUA_Achr6P16550_001	Banana	cytosol	67.55	66.92
PGSC0003DMT400078468	Potato	nucleus	60.34	62.97
Solyc05g008190.2.1	Tomato	nucleus	61.67	61.67
VIT_13s0074g00030.t01	Wine grape	nucleus	61.1	60.07
KRH34701	Soybean	nucleus	60.15	59.25
KRG92087	Soybean	nucleus	59.96	59.07
AT3G10530.1	Thale cress	nucleus	58.82	57.84
Bra029849.1-P	Field mustard	nucleus	54.84	57.46
CDY41358	Canola	nucleus	57.5	56.53
Bra034124.1-P	Field mustard	nucleus	57.5	56.53
CDY71163	Canola	nucleus	57.31	56.34
CDY08595	Canola	mitochondrion, nucleus	54.84	52.83
CDY00951	Canola	plastid	54.46	52.09
HORVU7Hr1G043570.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	6.64	47.3
HORVU6Hr1G037120.1	Barley	cytosol, nucleus, plastid	6.64	47.3
HORVU6Hr1G016260.1	Barley	cytosol	6.45	45.95
HORVU7Hr1G050690.1	Barley	cytosol, extracellular, nucleus	3.98	45.65
HORVU5Hr1G075250.1	Barley	cytosol	3.8	43.48

Protein Annotations

MapMan:17.1.3.2.1.11	Gene3D:2.130.10.10	InterPro:BING4_C_dom	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PD023243	PFAM:PF00400
PFAM:PF08149	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR14085	SMART:SM00320
SMART:SM01033	SUPFAM:SSF50978	EnsemblPlantsGene:TraesCS1D01G385600	EnsemblPlants:TraesCS1D01G385600.1	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:

Description

No Description!

Coordinates

chr1D:+:458824434..458829723

Molecular Weight (calculated)

59531.3 Da

IEP (calculated)

10.124

GRAVY (calculated)

-0.590

Length

527 amino acids

Sequence
(BLAST)

001: MEGDPREREN RRGSLDEMEM KVARFSRGKA ANLGDLRDKK LKGQLAGKEK LIGVSAKAAA QAEKWLLPSV GGYLEPEGLE KTYRFEQWSI LPKVDIGSSR
101: KSFDMILPVF GPYTLEYTPN GRYMIVGGRK GHIAFMDMLN MELINEFEVK ETVCDVAFLQ NEQLFAVAQR KYPYIYNRHG TEIHCLKEHG KSLKLQFLDK
201: HLLLASINSY GQLHYQDMST GEMVANYSTG LGRTDVMRVN PYNAVIGLGH ARGKLTMWKP TSVKPLVTML CHKGSLTAVA FDRGGHLMAT AGGDQKIKIW
301: DLRKFEVVHS YTARAQSLDF SQKGLLASSN GSLVEIYRDC GGQDYKIYMK HRMVKGYQVG KVLFRPYEDI CGIGHSMGFS SMLVPGSGEP NFDTFVDNPM
401: ETGKQRREKE VQALLDKLQP ETIMLDPDVI ATVRQLKKKQ KKTKKEIEGE IEGAVEAAKN IRVKKKTKGR SKPSRRAKKK EEEVLRAKRP LLDQHKEASG
501: HPDKKLRIGD DTELPKALQR FAKNRQS

Best Arabidopsis Sequence Match ( AT3G10530.1 )
(BLAST)

001: MEISSEDNNL MEKVLPPVEQ ESDVELETKV KKYLRGEGAN LETLKDKKLK TQLASREKLY GKSAKAAAKI EKWLLPAEAG YLETEGLEKT WRVKQTDIAN
101: EVDILSSRNQ YDIVLPDFGP YKLDFTASGR HMLAGGRKGH LALLDMMNMS LIKEIQVRET VRDVAFLHND QFFAAAQKKY AYIYGRDGTE LHCLKERGPV
201: ARLRFLKNHF LLASVNMSGQ LHYQDVTHGG MVASIRTGKG RTDVMEVNPY NSVVGLGHSG GTVTMWKPTS QAPLVQMQCH PGPVSSVAFH PNGHLMATSG
301: KERKIKIWDL RKFEEVQTIH SFHAKTLSFS QKGLLAAGTG SFVQILGDSS GGSSHNYTRY MNHSMVKGYQ IEKVMFRPYE DVIGIGHSMG WSSILIPGSG
401: EPNFDSWVAN PFETSKQRRE KEVHSLLDKL PPETIMLDPS KIGAMRPSRR KEKPSRGEIE AEKEVAIEAA KSTELKNKTK GRNKPSKRTK KKKEMVENAK
501: RTFPEQEHNT AIKKRRIVED AAAELPTSLK RFARKN

Arabidopsis Description

F18K10.11 protein [Source:UniProtKB/TrEMBL;Acc:Q9LPP3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.