Factsheet for TraesCS6A01G333400.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, vacuole

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, vacuole
Any Predictor:	plastid, secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G363800.1	Wheat	golgi, vacuole	88.21	93.03
TraesCS6D01G312500.1	Wheat	golgi, vacuole	90.33	91.19
TraesCS6A01G333300.1	Wheat	golgi, vacuole	84.43	84.04
TraesCS6A01G333500.1	Wheat	extracellular, vacuole	71.46	73.37
KXG31170	Sorghum	golgi, vacuole	62.5	64.16
Zm00001d052158_P001	Maize	golgi, vacuole	57.31	54.85
GSMUA_Achr6P30560_001	Banana	vacuole	53.54	54.57
PGSC0003DMT400090248	Potato	cytosol	34.43	53.48
KRH68364	Soybean	vacuole	51.65	53.41
KRG96633	Soybean	nucleus	51.18	52.93
PGSC0003DMT400095096	Potato	cytosol	37.74	51.95
Solyc01g008710.2.1	Tomato	extracellular	46.7	49.62
Solyc01g008720.1.1	Tomato	extracellular, golgi, vacuole	46.23	48.88
TraesCS3A01G241000.1	Wheat	golgi, vacuole	47.64	47.53
KRH68408	Soybean	vacuole	45.28	46.27
KRG96685	Soybean	golgi, vacuole	45.52	46.06
Bra033312.1-P	Field mustard	golgi, vacuole	44.1	45.5
CDX89985	Canola	golgi, vacuole	43.87	45.26
CDY15229	Canola	golgi, vacuole	42.92	44.61
KRH33420	Soybean	extracellular, golgi	34.67	43.24
TraesCS4A01G368600.1	Wheat	endoplasmic reticulum, golgi, vacuole	47.41	42.68
AT1G02310.2	Thale cress	golgi, vacuole	43.16	42.46
TraesCS5A01G146400.1	Wheat	mitochondrion, plasma membrane, plastid, vacuole	40.33	40.71
TraesCS3A01G274200.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	41.04	39.19
Os02t0766900-00	Rice	extracellular, golgi, vacuole	37.74	37.47
TraesCS7A01G223800.1	Wheat	cytosol	31.6	33.75

Protein Annotations

EnsemblPlants:TraesCS6A01G333400.1	EnsemblPlantsGene:TraesCS6A01G333400	Gene3D:3.20.20.80	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:Glyco_hydro_5	InterPro:Glycoside_hydrolase_SF
PANTHER:PTHR31451	PANTHER:PTHR31451:SF20	PFAM:PF00150	SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF51445
MapMan:21.2.3.2.2	:	:	:	:	:

Description

No Description!

Coordinates

chr6A:+:564507878..564510194

Molecular Weight (calculated)

47093.7 Da

IEP (calculated)

7.599

GRAVY (calculated)

-0.265

Length

424 amino acids

Sequence
(BLAST)

001: MGTSNARWLM VVSCLAVMAL AAGARRPSID DDAAPAPAPA PIKWGVKAEV RGFARADGTR FTVGGRPFYP NGFNAYWLMY MASNPADRSK VLDVLDQASR
101: LGATVIRTWA FSDGGSNRPL QTTPGVYSED VFVGLDFVIA EAKKRGLYLI LSLVNNWGDF GGKRQYVQWA KDQGHNLGSD DDFFRDALTQ QFYKEHVKRV
201: LTRINSFTGV AYKDEPTIFA WELMNEPRVL TDPSGKTMQA WVALMSSYVK SIDDKHMVEV GLEGFYGEST PERKRFNPGG DSAGTDFIGN NRIPTVDFAT
301: IHYYPDVWLP GSTGEQQVEF WKKWMASHIE DTAKALRKPL VVAEFGWNSV GNAVTARDDY FRMVYDAIYA SAKRGGPCAG GLFWQVLAPG MESWTDRYAV
401: VLERSSTTAA IVSQEYARIG RITP

Best Arabidopsis Sequence Match ( AT3G10890.1 )
(BLAST)

001: MKCLCFVVLL AILIAQNSSD LGVKSASSDG FVSRKGVQFI LNGKPFYANG FNAYWLAYEA TDSTTRFKIT YVFQNATIHD LTIVRTWGFR DGGYRALQIA
101: PGVYDEKTFQ GLDFAIAEAK RLGIKMIITF VNNYSDFGGR KQYVDWAKNT GQNVSSDDDF YTNPLVKQYY KNHVKTMVNR VNTFTKVEYK DEPTIMGWEL
201: MNEPQCRADP SGKTLTAWMN EMALYVKSVD SKHLLSTGLE GFYGDSSPQR KTSLNPVAAN VLGTDFIANH KLDAIDFASI HSYPDLWFPN LDEKSRLNLL
301: RKWLECHLED AQNILKKPLI LGEFGKPTNT PGYTQAQRDA VFNATFDTIY ESAEKGGPAA GALFWHVISD GMNNFKDPLS IVLSENSTTV NIITEESRKL
401: GLIRGKGKLS KTKI

Arabidopsis Description

MAN3Mannan endo-1,4-beta-mannosidase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SG94]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.