Factsheet for Solyc01g008710.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 1
extracellular 5
endoplasmic reticulum 4
vacuole 6
plasma membrane 4
golgi 4
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	vacuole

extracellular: 22364583
extracellular: 22892874
plastid: 26371478

msms PMID: 22892874 doi

EH Konozy, H Rogniaux, M Causse, M Faurobert

Unité de Génétique et Amélioration des Fruits et Légumes, INRA, BP 94, 84143 Montfavet, France. ehkonozy@yahoo.com

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400090248	Potato	cytosol	61.4	89.74
Solyc01g008720.1.1	Tomato	extracellular, golgi, vacuole	79.95	79.55
KRG96633	Soybean	nucleus	56.39	54.88
KXG31170	Sorghum	golgi, vacuole	56.39	54.48
KRG96685	Soybean	golgi, vacuole	57.14	54.42
GSMUA_Achr6P30560_001	Banana	vacuole	56.64	54.33
KRH68408	Soybean	vacuole	55.89	53.73
KRH68364	Soybean	vacuole	54.89	53.41
Solyc04g080620.2.1	Tomato	endoplasmic reticulum, vacuole	55.14	53.27
KRH33420	Soybean	extracellular, golgi	44.86	52.65
Bra033312.1-P	Field mustard	golgi, vacuole	52.13	50.61
CDX89985	Canola	golgi, vacuole	51.88	50.37
TraesCS6D01G312600.1	Wheat	vacuole	51.63	49.88
TraesCS6B01G363900.1	Wheat	endoplasmic reticulum, extracellular, vacuole	51.13	49.39
TraesCS6A01G333500.1	Wheat	extracellular, vacuole	51.13	49.39
CDY15229	Canola	golgi, vacuole	50.13	49.02
Solyc02g084990.2.1	Tomato	nucleus	52.88	48.62
TraesCS6B01G363800.1	Wheat	golgi, vacuole	48.62	48.26
Solyc06g064520.2.1	Tomato	vacuole	49.62	47.83
TraesCS6D01G311900.1	Wheat	vacuole	50.88	47.65
TraesCS6A01G333300.1	Wheat	golgi, vacuole	50.88	47.65
Solyc12g013770.1.1	Tomato	vacuole	37.59	47.47
TraesCS6B01G363700.1	Wheat	golgi, vacuole	50.38	47.07
TraesCS6A01G333400.1	Wheat	golgi, vacuole	49.62	46.7
HORVU0Hr1G017220.2	Barley	mitochondrion, vacuole	50.63	46.65
AT1G02310.2	Thale cress	golgi, vacuole	50.38	46.64
TraesCS6D01G312500.1	Wheat	golgi, vacuole	48.87	46.43
Zm00001d052158_P001	Maize	golgi, vacuole	49.12	44.24
GSMUA_Achr3P12210_001	Banana	cytosol	51.63	43.28
Solyc12g013750.1.1	Tomato	cytosol	11.28	43.27
Solyc10g074920.1.1	Tomato	extracellular	48.62	43.21
Solyc12g013670.1.1	Tomato	cytosol	19.05	42.94
Solyc07g053920.2.1	Tomato	vacuole	42.86	38.78
Solyc10g008300.2.1	Tomato	golgi, mitochondrion, vacuole	42.36	38.06
Solyc11g012190.1.1	Tomato	golgi, vacuole	40.6	35.45
Solyc12g013760.1.1	Tomato	cytosol	6.02	34.78
Os02t0766900-00	Rice	extracellular, golgi, vacuole	31.83	29.74

Protein Annotations

PDB:1RH9	MapMan:21.2.3.2.2	Gene3D:3.20.20.80	EMBL:AY034075	EMBL:AY046588	EMBL:AY046589
GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005575	GO:GO:0005576	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0016798
GO:GO:0016985	GO:GO:0046355	InterPro:Glyco_hydro_5	InterPro:Glycoside_hydrolase_SF	PFAM:PF00150	PANTHER:PTHR31451
PANTHER:PTHR31451:SF18	UniProt:Q8L5J1	SUPFAM:SSF51445	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc01g008710.2	EnsemblPlants:Solyc01g008710.2.1
UniParc:UPI00000ACA72	SEG:seg	:	:	:	:

Description

MAN4Mannan endo-1,4-beta-mannosidase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8L5J1]

Coordinates

chr1:+:2755066..2758116

Molecular Weight (calculated)

45341.1 Da

IEP (calculated)

9.174

GRAVY (calculated)

-0.275

Length

399 amino acids

Sequence
(BLAST)

001: MNNSIILIFV AILIIFPNEF SKPTRAFSNN NFVYTDGTHF ALNGKSLYIN GFNAYWLMYI AYDPSTRIKV TNTFQQASKY KMNVARTWAF SHGGSRPLQS
101: APGVYNEQMF QGLDFVISEA KKYGIHLIMS LVNNWDAFGG KKQYVEWAVQ RGQKLTSDDD FFTNPMVKGF YKNNVKVVLT RVNTITKVAY KDDPTILSWE
201: LINEPRCPSD LSGKTFQNWV LEMAGYLKSI DSNHLLEIGL EGFYGNDMRQ YNPNSYIFGT NFISNNQVQG IDFTTIHMYP NQWLPGLTQE AQDKWASQWI
301: QVHIDDSKML KKPLLIAEFG KSTKTPGYTV AKRDNYFEKI YGTIFNCAKS GGPCGGGLFW QVLGQGMSSF DDGYQVVLQE SPSTSRVILL QSLRLSKLS

Best Arabidopsis Sequence Match ( AT5G66460.1 )
(BLAST)

001: MKLLALFPFL AIVIQLSCWE LGTDALPSGG FVRTKGVQFS LNGYPYYANG FNAYWLMYVA SDPSQRSKIS TAFQDASRHG LTVARTWAFS DGGYRALQYS
101: PGSYNEDMFQ GLDFALAEAR RHGIKIILSF ANNYESFGGR KQYVDWARSR GRPVSSEDDF FTDSLVKDFY KNHIKAVLNR FNTFTKVHYK DDPTIMAWEL
201: MNEPRCPSDP SGRAIQAWIT EMAAHVKSLD RNHLLEAGLE GFYGQSSPQS KTLNPPGQFG TDFIANNRIP GIDFVTVHSY PDEWFPDSSE QSQMDFLNKW
301: LDAHIQDAQN VLHKPIILAE FGKSMKKPGY TPAQRDIVFN TVYSKIYGSA KRGGAAAGGL FWQLLVNGID NFQDGYGIIL SQSSSTVNVI SQQSRKLTLI
401: RKIFARMINV EKWKRARGQG QVGKRGHKIN N

Arabidopsis Description

MAN7MAN7 [Source:UniProtKB/TrEMBL;Acc:A0A178UNQ8]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.