Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 7
- vacuole 7
- plasma membrane 5
- golgi 5
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
extracellular: 29876421 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400080203 | Potato | endoplasmic reticulum | 96.21 | 96.21 |
| VIT_08s0058g01460.t01 | Wine grape | cytosol, nucleus, plastid, vacuole | 71.94 | 79.17 |
| VIT_08s0058g01480.t01 | Wine grape | cytosol, mitochondrion, vacuole | 71.94 | 72.1 |
| KRH64877 | Soybean | endoplasmic reticulum | 73.94 | 71.71 |
| KRH00473 | Soybean | nucleus | 72.16 | 70.13 |
| HORVU4Hr1G058920.3 | Barley | cytosol | 26.06 | 69.64 |
| HORVU3Hr1G057870.3 | Barley | cytosol | 24.72 | 68.52 |
| CDY11173 | Canola | endoplasmic reticulum, vacuole | 65.48 | 66.52 |
| KRH40712 | Soybean | nucleus | 72.38 | 66.46 |
| Os11t0118200-01 | Rice | cytosol | 29.62 | 65.84 |
| AT5G01930.1 | Thale cress | endoplasmic reticulum | 65.48 | 65.62 |
| KRH09553 | Soybean | endoplasmic reticulum, plastid, vacuole | 71.71 | 64.92 |
| HORVU3Hr1G003960.2 | Barley | cytosol | 16.26 | 63.48 |
| HORVU5Hr1G083060.1 | Barley | cytosol, plastid, vacuole | 21.38 | 62.34 |
| HORVU5Hr1G083020.2 | Barley | extracellular, mitochondrion, plastid, vacuole | 17.82 | 62.02 |
| Os12t0117300-00 | Rice | cytosol | 51.22 | 60.21 |
| GSMUA_Achr3P09750_001 | Banana | endoplasmic reticulum | 61.69 | 59.7 |
| GSMUA_Achr7P22010_001 | Banana | cytosol | 54.12 | 58.7 |
| TraesCS5D01G145900.1 | Wheat | cytosol | 50.33 | 58.55 |
| HORVU6Hr1G036770.2 | Barley | cytosol | 16.26 | 58.4 |
| HORVU5Hr1G046370.1 | Barley | mitochondrion | 50.56 | 54.05 |
| TraesCS5A01G146400.1 | Wheat | mitochondrion, plasma membrane, plastid, vacuole | 50.56 | 54.05 |
| TraesCS5B01G145200.1 | Wheat | mitochondrion, plasma membrane, vacuole | 50.33 | 53.81 |
| Zm00001d005052_P002 | Maize | plasma membrane | 51.0 | 52.89 |
| EES09143 | Sorghum | cytosol, plasma membrane, plastid, vacuole | 50.11 | 52.69 |
| Solyc01g008710.2.1 | Tomato | extracellular | 43.21 | 48.62 |
| Solyc06g064520.2.1 | Tomato | vacuole | 44.77 | 48.55 |
| Solyc01g008720.1.1 | Tomato | extracellular, golgi, vacuole | 42.54 | 47.63 |
| Bra005662.1-P | Field mustard | nucleus | 66.59 | 47.16 |
| Solyc04g080620.2.1 | Tomato | endoplasmic reticulum, vacuole | 42.98 | 46.73 |
| Solyc12g013770.1.1 | Tomato | vacuole | 32.52 | 46.2 |
| Solyc02g084990.2.1 | Tomato | nucleus | 43.43 | 44.93 |
| HORVU6Hr1G009620.1 | Barley | cytosol | 14.7 | 42.04 |
| Solyc07g053920.2.1 | Tomato | vacuole | 40.98 | 41.72 |
| Solyc12g013670.1.1 | Tomato | cytosol | 16.26 | 41.24 |
| Solyc10g008300.2.1 | Tomato | golgi, mitochondrion, vacuole | 40.53 | 40.99 |
| Solyc12g013750.1.1 | Tomato | cytosol | 8.91 | 38.46 |
| CDY61603 | Canola | nucleus | 58.35 | 37.16 |
| Solyc11g012190.1.1 | Tomato | golgi, vacuole | 37.64 | 36.98 |
| Solyc12g013760.1.1 | Tomato | cytosol | 5.35 | 34.78 |
Protein Annotations
| MapMan:21.2.3.2.2 | Gene3D:3.20.20.80 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004553 | GO:GO:0005975 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009791 | GO:GO:0009845 |
| GO:GO:0009987 | GO:GO:0016787 | GO:GO:0016798 | GO:GO:0016985 | GO:GO:0046355 | InterPro:Glyco_hydro_5 |
| InterPro:Glycoside_hydrolase_SF | UniProt:K4D1T4 | PFAM:PF00150 | PANTHER:PTHR31451 | PANTHER:PTHR31451:SF17 | SUPFAM:SSF51445 |
| SignalP:SignalP-noTM | EnsemblPlantsGene:Solyc10g074920.1 | EnsemblPlants:Solyc10g074920.1.1 | TMHMM:TMhelix | UniParc:UPI0002769A67 | : |
Description
Mannan endo-1,4-beta-mannosidase 6 [Source:Projected from Arabidopsis thaliana (AT5G01930) UniProtKB/Swiss-Prot;Acc:Q9LZV3]
Coordinates
chr10:+:58634624..58636556
Molecular Weight (calculated)
50495.7 Da
IEP (calculated)
6.647
GRAVY (calculated)
-0.258
Length
449 amino acids
Sequence
(BLAST)
(BLAST)
001: MVTHKQSFSS KFLILAASFV LVMFIKNANC APFDEAGNEG EMKDEAAWTM VQKSGNQFVL NGQPFYVNGF NTYWLMVFAA DQSTRGKVTE VFQQASAVGL
101: SVCRTWAFND GQWRALQKTP GVYDEDVFKA LDFVVSEAKK FKIRLILSLV NNWEAYGGKS QYVKWGKAAG LNLTSDDDFF SHPTLKSYYK AHVKAVLNRV
201: NTFTNITYKD DPTIFGWELM NEPRCESDPS GDKLHAWIEE MAVYVKTIDP KHLVQIGLEG FYGPSTPNKA QINPNSYAQQ VGTDFIRNHQ VLGVDFASVH
301: IYPDSWISQE ISDAHIGFTK TWMQAHIDDA ENYLNMPVVF SEFGVSAKDP GYNSSFRDAL ISTVYTVLLN STKKGGAGGG SLLWQVFPEG TDYMDDGYAI
401: VLSKALSTSN IVSLHSKRLN TYNSLCSWKC HWGCKKKHVL DNFQLREEL
101: SVCRTWAFND GQWRALQKTP GVYDEDVFKA LDFVVSEAKK FKIRLILSLV NNWEAYGGKS QYVKWGKAAG LNLTSDDDFF SHPTLKSYYK AHVKAVLNRV
201: NTFTNITYKD DPTIFGWELM NEPRCESDPS GDKLHAWIEE MAVYVKTIDP KHLVQIGLEG FYGPSTPNKA QINPNSYAQQ VGTDFIRNHQ VLGVDFASVH
301: IYPDSWISQE ISDAHIGFTK TWMQAHIDDA ENYLNMPVVF SEFGVSAKDP GYNSSFRDAL ISTVYTVLLN STKKGGAGGG SLLWQVFPEG TDYMDDGYAI
401: VLSKALSTSN IVSLHSKRLN TYNSLCSWKC HWGCKKKHVL DNFQLREEL
001: MKDQLGFRIV LCSAVFIILT QNRALADLDS ESHEVNSESV GEEQWEMVQR KGMQFTLNGQ PFYVNGFNTY WMMTLAADNS TRGKVTEVFQ QASAVGMTVG
101: RTWAFNDGQW RALQKSPSVY DEEVFKALDF VLSEARKYKI RLILSLVNNW DAYGGKAQYV KWGNASGLNL TSDDDFFTNP TLRNFYQSHV RTVLNRVNTF
201: TNITYKNDPT IFAWELMNEP RCPSDPSGDK LQSWIQEMAV FVKSLDAKHL VEIGLEGFYG PSAPARTRFN PNPYAAQVGT DFIRNNQVLG IDFASVHVYP
301: DSWISPAVSN SFLEFTSSWM QAHVEDAEMY LGMPVLFTEF GVSAHDPGFN TSFRDMMLNT VYKMTLNSTR KGGAGAGSLV WQVFPQGAEF MDDGYAVYLT
401: RAHTASKIIS LQSKRLAIFN SLCSWRCRWG CKKKNQTALD ALLSHDEL
101: RTWAFNDGQW RALQKSPSVY DEEVFKALDF VLSEARKYKI RLILSLVNNW DAYGGKAQYV KWGNASGLNL TSDDDFFTNP TLRNFYQSHV RTVLNRVNTF
201: TNITYKNDPT IFAWELMNEP RCPSDPSGDK LQSWIQEMAV FVKSLDAKHL VEIGLEGFYG PSAPARTRFN PNPYAAQVGT DFIRNNQVLG IDFASVHVYP
301: DSWISPAVSN SFLEFTSSWM QAHVEDAEMY LGMPVLFTEF GVSAHDPGFN TSFRDMMLNT VYKMTLNSTR KGGAGAGSLV WQVFPQGAEF MDDGYAVYLT
401: RAHTASKIIS LQSKRLAIFN SLCSWRCRWG CKKKNQTALD ALLSHDEL
Arabidopsis Description
MAN6Mannan endo-1,4-beta-mannosidase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZV3]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.