CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 5
endoplasmic reticulum 7
vacuole 5
plasma membrane 5
golgi 5
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40712	Soybean	nucleus	97.19	91.82
VIT_08s0058g01460.t01	Wine grape	cytosol, nucleus, plastid, vacuole	72.29	81.86
KRH64877	Soybean	endoplasmic reticulum	80.74	80.56
VIT_08s0058g01480.t01	Wine grape	cytosol, mitochondrion, vacuole	73.16	75.45
KRH09553	Soybean	endoplasmic reticulum, plastid, vacuole	77.92	72.58
Solyc10g074920.1.1	Tomato	extracellular	70.13	72.16
PGSC0003DMT400080203	Potato	endoplasmic reticulum	69.05	71.05
CDY11173	Canola	endoplasmic reticulum, vacuole	63.42	66.29
HORVU4Hr1G058920.3	Barley	cytosol	24.03	66.07
AT5G01930.1	Thale cress	endoplasmic reticulum	63.85	65.85
HORVU3Hr1G057870.3	Barley	cytosol	22.94	65.43
HORVU3Hr1G003960.2	Barley	cytosol	15.37	61.74
Os11t0118200-01	Rice	cytosol	26.84	61.39
HORVU5Hr1G083020.2	Barley	extracellular, mitochondrion, plastid, vacuole	16.88	60.47
HORVU5Hr1G083060.1	Barley	cytosol, plastid, vacuole	19.91	59.74
GSMUA_Achr3P09750_001	Banana	endoplasmic reticulum	59.52	59.27
GSMUA_Achr7P22010_001	Banana	cytosol	52.16	58.21
HORVU6Hr1G036770.2	Barley	cytosol	15.37	56.8
TraesCS5D01G145900.1	Wheat	cytosol	46.97	56.22
Os12t0117300-00	Rice	cytosol	46.32	56.02
HORVU5Hr1G046370.1	Barley	mitochondrion	47.4	52.14
TraesCS5B01G145200.1	Wheat	mitochondrion, plasma membrane, vacuole	47.19	51.9
TraesCS5A01G146400.1	Wheat	mitochondrion, plasma membrane, plastid, vacuole	46.97	51.67
EES09143	Sorghum	cytosol, plasma membrane, plastid, vacuole	47.19	51.05
Zm00001d005052_P002	Maize	plasma membrane	47.4	50.58
KRH23949	Soybean	vacuole	41.77	47.42
KRH39855	Soybean	vacuole	41.77	47.42
Bra005662.1-P	Field mustard	nucleus	64.72	47.16
KRG96633	Soybean	nucleus	41.77	47.07
KRH68364	Soybean	vacuole	41.56	46.83
KRH28716	Soybean	vacuole	42.86	46.59
KRG96685	Soybean	golgi, vacuole	41.77	46.06
KRH61141	Soybean	cytosol, nucleus, vacuole	39.83	45.43
KRH68408	Soybean	vacuole	40.48	45.06
KRH51830	Soybean	endoplasmic reticulum, vacuole	40.48	44.52
KRH22381	Soybean	vacuole	41.13	44.39
KRH26952	Soybean	extracellular, plasma membrane, vacuole	40.26	43.46
KRH25580	Soybean	mitochondrion	40.26	42.66
KRH55954	Soybean	mitochondrion, vacuole	39.83	42.2
KRH76746	Soybean	plasma membrane	42.86	42.13
HORVU6Hr1G009620.1	Barley	cytosol	14.29	42.04
KRH05852	Soybean	extracellular, golgi, vacuole	38.96	41.67
KRH15168	Soybean	extracellular, golgi, vacuole	38.31	41.26
KRH33420	Soybean	extracellular, golgi	30.3	41.18
CDY61603	Canola	nucleus	55.63	36.45

Protein Annotations

EntrezGene:100811794	MapMan:21.2.3.2.2	Gene3D:3.20.20.80	EMBL:ACUP02011451	EnsemblPlantsGene:GLYMA_18G215600	GO:GO:0003674
GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016787	GO:GO:0016798	GO:GO:0016985	GO:GO:0046355	InterPro:Glyco_hydro_5
InterPro:Glycoside_hydrolase_SF	UniProt:I1N3A5	EnsemblPlants:KRH00473	ProteinID:KRH00473	ProteinID:KRH00473.1	PFAM:PF00150
PANTHER:PTHR31451	PANTHER:PTHR31451:SF17	SUPFAM:SSF51445	SignalP:SignalP-noTM	UniParc:UPI000233DFC0	:

Description

hypothetical protein

Coordinates

chr18:-:50266705..50269603

Molecular Weight (calculated)

52493.1 Da

IEP (calculated)

5.681

GRAVY (calculated)

-0.390

Length

462 amino acids

Sequence
(BLAST)

001: MERFGVRIIS LILLLMLTKN LSSNALGDSM KDEEGLKEDQ NEMENSLSNY DEMRGMKDDD WQMVQKKGNH FVVNDKPFYV NGFNTYWLMV FAADESTRGK
101: VTEVFKQASS VGMTVCRTWA FNDGQWRALQ KSPSVYDEEV FKALDFVVSE AKKYKIRLIL SLANNWEAYG GKAQYVKWGN AAGLNLTSDD DFFSHPTLRS
201: YYKAHVKTVL NRVNTFTNIT YKEDPTIFAW ELMNEPRCTS DPTGDKLQDW IQEMAFHVKK IDPKHLVEVG VEGFYGPSTP QRTQFNPNTY ATQVGTDFIR
301: NHLVLGVDFA SVHIYADSWI SQQIADTHIP FIKSWMEAHI EDAEKYLGMP VVFAEFGVSS KDPGYNSSYR DTVISTVYST ILNSTKKGGS GAGSLLWQFF
401: PDGTDNMDDG YAIVLSKSPS TSGIIQLQST RLALFNSLCN TKCNWGCKKK KLLEEILYRD EL

Best Arabidopsis Sequence Match ( AT3G10890.1 )
(BLAST)

001: MKCLCFVVLL AILIAQNSSD LGVKSASSDG FVSRKGVQFI LNGKPFYANG FNAYWLAYEA TDSTTRFKIT YVFQNATIHD LTIVRTWGFR DGGYRALQIA
101: PGVYDEKTFQ GLDFAIAEAK RLGIKMIITF VNNYSDFGGR KQYVDWAKNT GQNVSSDDDF YTNPLVKQYY KNHVKTMVNR VNTFTKVEYK DEPTIMGWEL
201: MNEPQCRADP SGKTLTAWMN EMALYVKSVD SKHLLSTGLE GFYGDSSPQR KTSLNPVAAN VLGTDFIANH KLDAIDFASI HSYPDLWFPN LDEKSRLNLL
301: RKWLECHLED AQNILKKPLI LGEFGKPTNT PGYTQAQRDA VFNATFDTIY ESAEKGGPAA GALFWHVISD GMNNFKDPLS IVLSENSTTV NIITEESRKL
401: GLIRGKGKLS KTKI

Arabidopsis Description

MAN3Mannan endo-1,4-beta-mannosidase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SG94]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.