Factsheet for Bra005662.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
plastid 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11173	Canola	endoplasmic reticulum, vacuole	69.72	100.0
AT5G01930.1	Thale cress	endoplasmic reticulum	65.14	92.19
VIT_08s0058g01460.t01	Wine grape	cytosol, nucleus, plastid, vacuole	46.53	72.3
KRH64877	Soybean	endoplasmic reticulum	49.21	67.39
Solyc10g074920.1.1	Tomato	extracellular	47.16	66.59
VIT_08s0058g01480.t01	Wine grape	cytosol, mitochondrion, vacuole	46.85	66.29
PGSC0003DMT400080203	Potato	endoplasmic reticulum	46.85	66.15
HORVU4Hr1G058920.3	Barley	cytosol	17.35	65.48
KRH00473	Soybean	nucleus	47.16	64.72
HORVU3Hr1G057870.3	Barley	cytosol	16.25	63.58
KRH40712	Soybean	nucleus	47.48	61.55
KRH09553	Soybean	endoplasmic reticulum, plastid, vacuole	47.79	61.09
Os11t0118200-01	Rice	cytosol	19.24	60.4
GSMUA_Achr3P09750_001	Banana	endoplasmic reticulum	43.85	59.91
HORVU5Hr1G083020.2	Barley	extracellular, mitochondrion, plastid, vacuole	12.15	59.69
HORVU5Hr1G083060.1	Barley	cytosol, plastid, vacuole	14.2	58.44
HORVU3Hr1G003960.2	Barley	cytosol	10.25	56.52
GSMUA_Achr7P22010_001	Banana	cytosol	35.33	54.11
Os12t0117300-00	Rice	cytosol	32.18	53.4
TraesCS5D01G145900.1	Wheat	cytosol	32.33	53.11
HORVU6Hr1G036770.2	Barley	cytosol	10.41	52.8
TraesCS5A01G146400.1	Wheat	mitochondrion, plasma membrane, plastid, vacuole	33.44	50.48
TraesCS5B01G145200.1	Wheat	mitochondrion, plasma membrane, vacuole	33.44	50.48
HORVU5Hr1G046370.1	Barley	mitochondrion	33.28	50.24
Zm00001d005052_P002	Maize	plasma membrane	33.75	49.42
EES09143	Sorghum	cytosol, plasma membrane, plastid, vacuole	33.28	49.41
Bra036494.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	22.4	49.13
Bra033312.1-P	Field mustard	golgi, vacuole	28.86	44.53
Bra034151.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	28.08	42.89
Bra001383.1-P	Field mustard	extracellular	27.92	42.65
Bra036493.1-P	Field mustard	vacuole	28.39	42.55
Bra031137.1-P	Field mustard	golgi, vacuole	28.71	42.13
Bra026266.1-P	Field mustard	vacuole	28.55	42.0
HORVU6Hr1G009620.1	Barley	cytosol	10.25	41.4

Protein Annotations

MapMan:17.4.1.2.1.2	MapMan:21.2.3.2.2	Gene3D:3.20.20.80	Gene3D:3.30.70.3150	EnsemblPlantsGene:Bra005662	EnsemblPlants:Bra005662.1
EnsemblPlants:Bra005662.1-P	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0003824
GO:GO:0004553	GO:GO:0005488	GO:GO:0005975	GO:GO:0006412	GO:GO:0006413	GO:GO:0007275
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009791	GO:GO:0009845
GO:GO:0009987	GO:GO:0016787	GO:GO:0016798	GO:GO:0019538	InterPro:Glyco_hydro_5	InterPro:Glycoside_hydrolase_SF
UniProt:M4CN74	PFAM:PF00150	PFAM:PF01873	PANTHER:PTHR31451	PANTHER:PTHR31451:SF35	SMART:SM00653
SUPFAM:SSF100966	SUPFAM:SSF51445	InterPro:Transl_init_fac_IF2/IF5	InterPro:Transl_init_fac_IF2/IF5_N	UniParc:UPI000253F9BC	SEG:seg

Description

AT5G01930 (E=8e-237) | (1-4)-beta-mannan endohydrolase, putative

Coordinates

chrA03:+:38301..41720

Molecular Weight (calculated)

72327.5 Da

IEP (calculated)

7.993

GRAVY (calculated)

-0.377

Length

634 amino acids

Sequence
(BLAST)

001: MDLQQELEQE ACWKLELDKV TKLDPSKKKK KKKKRPFIRE DATYDSEPDY GYAELLSRVF DMLREEEVST ERPRTVMMRR PQLLAQGTHI TVCLDFAHLC
101: TMMHRKPGHV ITFLLGQMET KGWLNKQHQL EMKGLVSSQH FQAVFQRYID AFVICSCCKS SDTALAEANG ISTLSCEMMN MKLPPRRYTC KKMKDRLGFR
201: FVLCSAVFMI LTQHRALANS HGVNSEEEEW EMVQRKGQQF TLNGQPFYVN GFNTYWMMTL AADNSTRGKV TDVFQQASAV GLTVGRTWAF NDGQWRALQK
301: SPSVYDEDVF KALDFVVSEA RKYKIRLILS LVNNWNDYGG KAQYVKWGNA SGLNLTSDDD FFTNPTLRDF YKSHVRTVLN RVNTFTNITY KNDPTIFAWE
401: LMNEPRCPSD PSGDKLQSWI QEMAVFVKSL DAKHMVEIGL EGFYGPSAPA RTKFNPNPYA AQVGTDFIRN NQALGVDFAS VHVYPDAWIS PAVSDTFLEF
501: TNSWMQAHVE DAEMYLGMPV LFTEFGVSAH DPGFNTSFRD MMLNTVYKMS LNSTRKGGAG AGSLVWQVFP QGAEFMDDGY AVYLTRAHTA SKIISLQSKR
601: LAIFNSLCGW RCKWGCKKKN HTALDALLSH DDEL

Best Arabidopsis Sequence Match ( AT5G01930.1 )
(BLAST)

001: MKDQLGFRIV LCSAVFIILT QNRALADLDS ESHEVNSESV GEEQWEMVQR KGMQFTLNGQ PFYVNGFNTY WMMTLAADNS TRGKVTEVFQ QASAVGMTVG
101: RTWAFNDGQW RALQKSPSVY DEEVFKALDF VLSEARKYKI RLILSLVNNW DAYGGKAQYV KWGNASGLNL TSDDDFFTNP TLRNFYQSHV RTVLNRVNTF
201: TNITYKNDPT IFAWELMNEP RCPSDPSGDK LQSWIQEMAV FVKSLDAKHL VEIGLEGFYG PSAPARTRFN PNPYAAQVGT DFIRNNQVLG IDFASVHVYP
301: DSWISPAVSN SFLEFTSSWM QAHVEDAEMY LGMPVLFTEF GVSAHDPGFN TSFRDMMLNT VYKMTLNSTR KGGAGAGSLV WQVFPQGAEF MDDGYAVYLT
401: RAHTASKIIS LQSKRLAIFN SLCSWRCRWG CKKKNQTALD ALLSHDEL

Arabidopsis Description

MAN6Mannan endo-1,4-beta-mannosidase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZV3]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.