CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 6
plasma membrane 5
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, vacuole
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G01930.1	Thale cress	endoplasmic reticulum	93.44	92.19
VIT_08s0058g01460.t01	Wine grape	cytosol, nucleus, plastid, vacuole	66.74	72.3
Bra005662.1-P	Field mustard	nucleus	100.0	69.72
VIT_08s0058g01480.t01	Wine grape	cytosol, mitochondrion, vacuole	66.52	65.62
Solyc10g074920.1.1	Tomato	extracellular	66.52	65.48
HORVU4Hr1G058920.3	Barley	cytosol	24.89	65.48
KRH64877	Soybean	endoplasmic reticulum	68.55	65.44
PGSC0003DMT400080203	Potato	endoplasmic reticulum	65.84	64.81
HORVU3Hr1G057870.3	Barley	cytosol	23.3	63.58
KRH00473	Soybean	nucleus	66.29	63.42
Os11t0118200-01	Rice	cytosol	27.6	60.4
KRH09553	Soybean	endoplasmic reticulum, plastid, vacuole	67.65	60.28
KRH40712	Soybean	nucleus	66.52	60.12
HORVU5Hr1G083020.2	Barley	extracellular, mitochondrion, plastid, vacuole	17.42	59.69
HORVU5Hr1G083060.1	Barley	cytosol, plastid, vacuole	20.36	58.44
GSMUA_Achr3P09750_001	Banana	endoplasmic reticulum	60.86	57.97
HORVU3Hr1G003960.2	Barley	cytosol	14.71	56.52
GSMUA_Achr7P22010_001	Banana	cytosol	50.68	54.11
Os12t0117300-00	Rice	cytosol	46.15	53.4
CDY61603	Canola	nucleus	85.07	53.33
TraesCS5D01G145900.1	Wheat	cytosol	46.38	53.11
HORVU6Hr1G036770.2	Barley	cytosol	14.93	52.8
TraesCS5A01G146400.1	Wheat	mitochondrion, plasma membrane, plastid, vacuole	47.06	49.52
TraesCS5B01G145200.1	Wheat	mitochondrion, plasma membrane, vacuole	47.06	49.52
HORVU5Hr1G046370.1	Barley	mitochondrion	46.83	49.29
CDX73899	Canola	extracellular	31.67	49.12
Zm00001d005052_P002	Maize	plasma membrane	47.29	48.27
EES09143	Sorghum	cytosol, plasma membrane, plastid, vacuole	46.15	47.78
CDX89985	Canola	golgi, vacuole	40.72	43.8
CDY15229	Canola	golgi, vacuole	40.27	43.63
CDY36280	Canola	endoplasmic reticulum, extracellular, vacuole	39.82	42.41
CDY31945	Canola	vacuole	40.27	42.08
CDX81978	Canola	golgi, vacuole	40.5	41.44
CDY13860	Canola	golgi, vacuole	40.5	41.44
HORVU6Hr1G009620.1	Barley	cytosol	14.71	41.4
CDX89187	Canola	vacuole	40.27	41.3
CDY18983	Canola	vacuole	40.05	41.07
CDY05783	Canola	extracellular, plasma membrane, vacuole	40.05	41.07
CDY45231	Canola	extracellular, vacuole	42.76	40.3
CDY68324	Canola	endoplasmic reticulum, vacuole	42.53	22.84

Protein Annotations

MapMan:21.2.3.2.2	Gene3D:3.20.20.80	GO:A0A078FGJ4	UniProt:A0A078FGJ4	EnsemblPlants:CDY11173	ProteinID:CDY11173
ProteinID:CDY11173.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	EnsemblPlantsGene:GSBRNA2T00049185001	InterPro:Glyco_hydro_5	InterPro:Glycoside_hydrolase_SF
PFAM:PF00150	PANTHER:PTHR31451	PANTHER:PTHR31451:SF35	SUPFAM:SSF51445	SignalP:SignalP-noTM	UniParc:UPI0004EF12DB
SEG:seg	:	:	:	:	:

Description

BnaA03g00090DBnaA03g00090D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FGJ4]

Coordinates

chrLK032010:+:23689..25669

Molecular Weight (calculated)

49975.1 Da

IEP (calculated)

6.853

GRAVY (calculated)

-0.302

Length

442 amino acids

Sequence
(BLAST)

001: MKDRLGFRFV LCSAVFMILT QHRALANSHG VNSEEEEWEM VQRKGQQFTL NGQPFYVNGF NTYWMMTLAA DNSTRGKVTD VFQQASAVGL TVGRTWAFND
101: GQWRALQKSP SVYDEDVFKA LDFVVSEARK YKIRLILSLV NNWNDYGGKA QYVKWGNASG LNLTSDDDFF TNPTLRDFYK SHVRTVLNRV NTFTNITYKN
201: DPTIFAWELM NEPRCPSDPS GDKLQSWIQE MAVFVKSLDA KHMVEIGLEG FYGPSAPART KFNPNPYAAQ VGTDFIRNNQ ALGVDFASVH VYPDAWISPA
301: VSDTFLEFTN SWMQAHVEDA EMYLGMPVLF TEFGVSAHDP GFNTSFRDMM LNTVYKMSLN STRKGGAGAG SLVWQVFPQG AEFMDDGYAV YLTRAHTASK
401: IISLQSKRLA IFNSLCGWRC KWGCKKKNHT ALDALLSHDD EL

Best Arabidopsis Sequence Match ( AT5G01930.1 )
(BLAST)

001: MKDQLGFRIV LCSAVFIILT QNRALADLDS ESHEVNSESV GEEQWEMVQR KGMQFTLNGQ PFYVNGFNTY WMMTLAADNS TRGKVTEVFQ QASAVGMTVG
101: RTWAFNDGQW RALQKSPSVY DEEVFKALDF VLSEARKYKI RLILSLVNNW DAYGGKAQYV KWGNASGLNL TSDDDFFTNP TLRNFYQSHV RTVLNRVNTF
201: TNITYKNDPT IFAWELMNEP RCPSDPSGDK LQSWIQEMAV FVKSLDAKHL VEIGLEGFYG PSAPARTRFN PNPYAAQVGT DFIRNNQVLG IDFASVHVYP
301: DSWISPAVSN SFLEFTSSWM QAHVEDAEMY LGMPVLFTEF GVSAHDPGFN TSFRDMMLNT VYKMTLNSTR KGGAGAGSLV WQVFPQGAEF MDDGYAVYLT
401: RAHTASKIIS LQSKRLAIFN SLCSWRCRWG CKKKNQTALD ALLSHDEL

Arabidopsis Description

MAN6Mannan endo-1,4-beta-mannosidase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZV3]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.