Factsheet for VIT_08s0058g01460.t01

Subcellular Localization

min:

: max

Winner_takes_all: vacuole, plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
plastid 1
vacuole 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0058g01480.t01	Wine grape	cytosol, mitochondrion, vacuole	94.85	86.38
KRH00473	Soybean	nucleus	81.86	72.29
Solyc10g074920.1.1	Tomato	extracellular	79.17	71.94
KRH64877	Soybean	endoplasmic reticulum	80.64	71.06
PGSC0003DMT400080203	Potato	endoplasmic reticulum	77.7	70.6
KRH40712	Soybean	nucleus	81.86	68.3
HORVU3Hr1G057870.3	Barley	cytosol	26.72	67.28
HORVU4Hr1G058920.3	Barley	cytosol	27.7	67.26
CDY11173	Canola	endoplasmic reticulum, vacuole	72.3	66.74
KRH09553	Soybean	endoplasmic reticulum, plastid, vacuole	80.64	66.33
AT5G01930.1	Thale cress	endoplasmic reticulum	72.79	66.29
Os11t0118200-01	Rice	cytosol	31.62	63.86
HORVU5Hr1G083020.2	Barley	extracellular, mitochondrion, plastid, vacuole	19.61	62.02
HORVU5Hr1G083060.1	Barley	cytosol, plastid, vacuole	22.79	60.39
HORVU3Hr1G003960.2	Barley	cytosol	16.91	60.0
GSMUA_Achr7P22010_001	Banana	cytosol	60.29	59.42
Os12t0117300-00	Rice	cytosol	54.66	58.38
GSMUA_Achr3P09750_001	Banana	endoplasmic reticulum	65.93	57.97
HORVU6Hr1G036770.2	Barley	cytosol	17.65	57.6
TraesCS5D01G145900.1	Wheat	cytosol	54.41	57.51
HORVU5Hr1G046370.1	Barley	mitochondrion	54.9	53.33
TraesCS5B01G145200.1	Wheat	mitochondrion, plasma membrane, vacuole	54.66	53.1
TraesCS5A01G146400.1	Wheat	mitochondrion, plasma membrane, plastid, vacuole	54.41	52.86
EES09143	Sorghum	cytosol, plasma membrane, plastid, vacuole	53.68	51.29
Zm00001d005052_P002	Maize	plasma membrane	54.41	51.27
VIT_18s0089g00180.t01	Wine grape	vacuole	40.44	48.67
VIT_18s0089g00160.t01	Wine grape	vacuole	48.04	48.64
VIT_18s0089g00190.t01	Wine grape	extracellular, vacuole	47.06	47.76
VIT_18s0089g00170.t01	Wine grape	vacuole	47.06	47.64
VIT_18s0001g12830.t01	Wine grape	extracellular, vacuole	50.25	47.34
VIT_04s0023g02130.t01	Wine grape	vacuole	50.0	47.11
VIT_18s0089g00200.t01	Wine grape	vacuole	47.55	46.86
Bra005662.1-P	Field mustard	nucleus	72.3	46.53
VIT_12s0028g03610.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	46.32	43.75
VIT_18s0089g00140.t01	Wine grape	cytosol, peroxisome, plastid, vacuole	44.61	43.44
HORVU6Hr1G009620.1	Barley	cytosol	16.67	43.31
VIT_00s0187g00280.t01	Wine grape	golgi, vacuole	42.4	38.53
VIT_00s0187g00320.t01	Wine grape	golgi, vacuole	41.91	37.92
CDY61603	Canola	nucleus	62.01	35.89

Protein Annotations

EntrezGene:100248160	wikigene:100248160	MapMan:21.2.3.2.2	Gene3D:3.20.20.80	ProteinID:CCB44761	ProteinID:CCB44761.1
UniProt:F6GXW0	EMBL:FN594967	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0016798
GO:GO:0016985	GO:GO:0046355	InterPro:Glyco_hydro_5	InterPro:Glycoside_hydrolase_SF	EntrezGene:LOC100248160	wikigene:LOC100248160
PFAM:PF00150	PANTHER:PTHR31451	PANTHER:PTHR31451:SF17	SUPFAM:SSF51445	UniParc:UPI0002109D09	ArrayExpress:VIT_08s0058g01460
EnsemblPlantsGene:VIT_08s0058g01460	EnsemblPlants:VIT_08s0058g01460.t01	RefSeq:XP_002273230	RefSeq:XP_002273230.2	:	:

Description

No Description!

Coordinates

chr8:-:10909426..10911527

Molecular Weight (calculated)

46232.5 Da

IEP (calculated)

5.845

GRAVY (calculated)

-0.330

Length

408 amino acids

Sequence
(BLAST)

001: MGDLGDEPWT MVQKKGNQFV VNGKPFYVNG FNTYWLMVFA VDQSTRGKVS EVFQQAASVG LTVCRTLAFN DGQWRALQKS PSVYDEEVFK ALDFVVSEAR
101: KYKIRLILSL VNNWEGYGGK AQYVKWGKEA GLNLTSDDDF FSHPTLRSYY KANTVLNRVN TFTNITYKED PTIFAWELMN EPRCTSDPTG DKLQSWIQEM
201: AVYVKSMDPK HLLEIGLEGF YGPSTPDKVQ VNPNTYAQQV GTDFIRNHLV LGVDFASVHI YPDSWISQSI TDAHLDFTRS WMQAHIEDSE KYLGMPVVFA
301: EFGVSSEDDG YNSSFRDTLI STVYKVLLNS TRKGGSGAGS LLWQLFPDGT DYMDDGYAIV LSKSPSTSNI IALQSTRLMM FNSKCARNCR WSCHKKHPLD
401: AFLFHDDL

Best Arabidopsis Sequence Match ( AT5G01930.1 )
(BLAST)

001: MKDQLGFRIV LCSAVFIILT QNRALADLDS ESHEVNSESV GEEQWEMVQR KGMQFTLNGQ PFYVNGFNTY WMMTLAADNS TRGKVTEVFQ QASAVGMTVG
101: RTWAFNDGQW RALQKSPSVY DEEVFKALDF VLSEARKYKI RLILSLVNNW DAYGGKAQYV KWGNASGLNL TSDDDFFTNP TLRNFYQSHV RTVLNRVNTF
201: TNITYKNDPT IFAWELMNEP RCPSDPSGDK LQSWIQEMAV FVKSLDAKHL VEIGLEGFYG PSAPARTRFN PNPYAAQVGT DFIRNNQVLG IDFASVHVYP
301: DSWISPAVSN SFLEFTSSWM QAHVEDAEMY LGMPVLFTEF GVSAHDPGFN TSFRDMMLNT VYKMTLNSTR KGGAGAGSLV WQVFPQGAEF MDDGYAVYLT
401: RAHTASKIIS LQSKRLAIFN SLCSWRCRWG CKKKNQTALD ALLSHDEL

Arabidopsis Description

MAN6Mannan endo-1,4-beta-mannosidase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZV3]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.