Factsheet for VIT_12s0028g03610.t01

Subcellular Localization

min:

: max

Winner_takes_all: golgi, endoplasmic reticulum, vacuole

Predictor Summary:

cytosol 2
extracellular 4
golgi 5
plasma membrane 4
endoplasmic reticulum 5
vacuole 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, golgi, vacuole
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036494.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	50.46	75.43
PGSC0003DMT400047236	Potato	vacuole	71.99	70.52
AT2G20680.1	Thale cress	plasma membrane, vacuole	70.6	70.44
CDY05783	Canola	extracellular, plasma membrane, vacuole	70.14	70.3
Solyc07g053920.2.1	Tomato	vacuole	71.76	70.29
Bra036493.1-P	Field mustard	vacuole	68.52	69.98
CDY31945	Canola	vacuole	68.52	69.98
Solyc10g008300.2.1	Tomato	golgi, mitochondrion, vacuole	71.76	69.82
KRH25580	Soybean	mitochondrion	70.37	69.72
PGSC0003DMT400034196	Potato	golgi, mitochondrion, plastid, vacuole	71.53	69.59
KRH26952	Soybean	extracellular, plasma membrane, vacuole	68.75	69.39
KRH22381	Soybean	vacuole	68.75	69.39
KRH55954	Soybean	mitochondrion, vacuole	69.68	69.04
GSMUA_Achr5P09360_001	Banana	endoplasmic reticulum, extracellular, vacuole	62.5	68.88
CDY13860	Canola	golgi, vacuole	68.52	68.52
Bra031137.1-P	Field mustard	golgi, vacuole	68.52	68.52
CDX81978	Canola	golgi, vacuole	68.29	68.29
CDY18983	Canola	vacuole	68.06	68.21
CDX89187	Canola	vacuole	68.06	68.21
Bra026266.1-P	Field mustard	vacuole	68.06	68.21
AT4G28320.1	Thale cress	vacuole	67.59	67.75
GSMUA_Achr1P04970_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	66.67	66.06
GSMUA_Achr8P20030_001	Banana	golgi, plastid, vacuole	62.5	60.27
GSMUA_Achr10P...	Banana	nucleus, plasma membrane, plastid, vacuole	63.89	57.26
TraesCS3A01G274200.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	58.1	56.53
TraesCS3B01G307900.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	57.87	56.31
TraesCS3D01G273400.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	57.87	56.18
Os01t0746700-00	Rice	endoplasmic reticulum, plasma membrane, vacuole	57.18	55.51
Zm00001d043443_P001	Maize	plasma membrane	58.1	55.41
EES03598	Sorghum	endoplasmic reticulum, vacuole	57.87	54.23
HORVU3Hr1G071210.3	Barley	extracellular, plasma membrane, vacuole	57.87	53.42
VIT_00s0187g00280.t01	Wine grape	golgi, vacuole	51.16	49.22
VIT_00s0187g00320.t01	Wine grape	golgi, vacuole	51.16	49.0
VIT_08s0058g01460.t01	Wine grape	cytosol, nucleus, plastid, vacuole	43.75	46.32
VIT_18s0089g00180.t01	Wine grape	vacuole	35.42	45.13
VIT_18s0089g00190.t01	Wine grape	extracellular, vacuole	41.2	44.28
VIT_08s0058g01480.t01	Wine grape	cytosol, mitochondrion, vacuole	43.75	42.19
VIT_18s0089g00160.t01	Wine grape	vacuole	39.12	41.94
VIT_18s0089g00170.t01	Wine grape	vacuole	38.89	41.69
VIT_04s0023g02130.t01	Wine grape	vacuole	41.2	41.11
VIT_18s0089g00200.t01	Wine grape	vacuole	38.43	40.1
VIT_18s0001g12830.t01	Wine grape	extracellular, vacuole	38.89	38.8
VIT_18s0089g00140.t01	Wine grape	cytosol, peroxisome, plastid, vacuole	37.5	38.66

Protein Annotations

EntrezGene:100266088	wikigene:100266088	MapMan:21.2.3.2.2	Gene3D:3.20.20.80	ProteinID:CBI21857	ProteinID:CBI21857.3
UniProt:E0CTE2	EMBL:FN595235	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005575
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016787	GO:GO:0016798	GO:GO:0016985	GO:GO:0046355	InterPro:Glyco_hydro_5
InterPro:Glycoside_hydrolase_SF	EntrezGene:LOC100266088	wikigene:LOC100266088	PFAM:PF00150	PANTHER:PTHR31451	PANTHER:PTHR31451:SF1
SUPFAM:SSF51445	TIGR:TC51861	TIGR:TC67062	TIGR:TC68167	TMHMM:TMhelix	UniParc:UPI00015CA05F
ArrayExpress:VIT_12s0028g03610	EnsemblPlantsGene:VIT_12s0028g03610	EnsemblPlants:VIT_12s0028g03610.t01	unigene:Vvi.10088	RefSeq:XP_002273772	RefSeq:XP_002273772.1
RefSeq:XP_019079252.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr12:+:4448616..4453007

Molecular Weight (calculated)

49435.9 Da

IEP (calculated)

8.516

GRAVY (calculated)

-0.316

Length

432 amino acids

Sequence
(BLAST)

001: MMAGNGLFYP IIGFASVFAF IYMSFGDLKI NLSEETKMSF VGRNGTQFMV DGKVFYINGW NSYWLMDQAV DEYSKPRVRA MLQAGAKMGL TVCRTWAFND
101: GAYHALQISP GRFDERVFKA LDHVIAEARK QGIRLLLTLV NNLQAYGGKT QYVNWAWQEG IGLSSSNDSF FFDPSIRIYF KNYVKAVLTR KNSITGIEYR
201: NDPTIFGWEL INEPRCMSDA SGDTLQDWLE EMSAYVKSID KKHLLTIGLE GFYGPNSPKR LTVNPAEWAA TLGADFIRNS KISTIDFASA HIYPDHWFHG
301: QEFEAELKYV SKWMLSHIED GEKELKKPVM FTEFGFSTDN KNFHPSKRDR FFKTVFDVMY QSARKNGAGA GSFVWQFLVG GMEEYNDDFG IVPWERPATY
401: RLITEHTCRL ARIQGGLAQQ KASLKDLCSR RR

Best Arabidopsis Sequence Match ( AT2G20680.1 )
(BLAST)

001: MAAPTGNGPV IPILGFLTCV AFIYLSFGDL WFGLKTEGEL AFVKRNGTQF VVDGKALYVN GWNSYWFMDH AVNDHSRHRV SAMLEAGAKM GLTVCRTWAF
101: NDGGYNALQI SPGRFDERVF KALDHVIAEA KTHGVRLLLS LVNNLQAYGG KTQYVNWAWQ EGVGLSSSND SFFFDPSIRR YFKNYLTVLL TRKNSLTGIE
201: YRNDPTIFAW ELINEPRCMS DVSGDTLQDW INEMTAFIKS IDNKHLLTVG LEGFYGPSSP KKLTVNPERW ASELGSDFVR NSDSPNIDFA SVHIYPDHWF
301: HDQGFEEKLK FVVKWMLSHI EDGDKELKKP VLFTEFGLSN LNKDYDPSQR DRFYRTIFDV IYKSAKRKRS GAGTLVWQFL IEGMEGFNDD FGIVPWEQDS
401: IQRLMIEQSC RLSRITGRHL LDKKSIEMCS HRP

Arabidopsis Description

MAN2Mannan endo-1,4-beta-mannosidase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q7Y223]
SUBAcon: [plasma membrane,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.