Factsheet for VIT_08s0058g01480.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, vacuole, cytosol

Predictor Summary:

nucleus 1
vacuole 2
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0058g01460.t01	Wine grape	cytosol, nucleus, plastid, vacuole	86.38	94.85
KRH00473	Soybean	nucleus	75.45	73.16
KRH64877	Soybean	endoplasmic reticulum	74.55	72.14
Solyc10g074920.1.1	Tomato	extracellular	72.1	71.94
PGSC0003DMT400080203	Potato	endoplasmic reticulum	71.21	71.05
KRH40712	Soybean	nucleus	75.0	68.71
HORVU4Hr1G058920.3	Barley	cytosol	25.45	67.86
HORVU3Hr1G057870.3	Barley	cytosol	24.33	67.28
KRH09553	Soybean	endoplasmic reticulum, plastid, vacuole	74.33	67.14
AT5G01930.1	Thale cress	endoplasmic reticulum	66.52	66.52
CDY11173	Canola	endoplasmic reticulum, vacuole	65.62	66.52
Os11t0118200-01	Rice	cytosol	29.02	64.36
HORVU5Hr1G083020.2	Barley	extracellular, mitochondrion, plastid, vacuole	18.08	62.79
HORVU3Hr1G003960.2	Barley	cytosol	15.85	61.74
HORVU5Hr1G083060.1	Barley	cytosol, plastid, vacuole	20.98	61.04
Os12t0117300-00	Rice	cytosol	51.34	60.21
GSMUA_Achr7P22010_001	Banana	cytosol	55.13	59.66
TraesCS5D01G145900.1	Wheat	cytosol	50.89	59.07
HORVU6Hr1G036770.2	Barley	cytosol	16.29	58.4
GSMUA_Achr3P09750_001	Banana	endoplasmic reticulum	60.27	58.19
HORVU5Hr1G046370.1	Barley	mitochondrion	51.34	54.76
TraesCS5B01G145200.1	Wheat	mitochondrion, plasma membrane, vacuole	51.12	54.52
TraesCS5A01G146400.1	Wheat	mitochondrion, plasma membrane, plastid, vacuole	50.89	54.29
Zm00001d005052_P002	Maize	plasma membrane	51.34	53.12
EES09143	Sorghum	cytosol, plasma membrane, plastid, vacuole	49.78	52.22
VIT_18s0089g00180.t01	Wine grape	vacuole	37.05	48.97
VIT_18s0089g00160.t01	Wine grape	vacuole	43.75	48.64
VIT_18s0089g00170.t01	Wine grape	vacuole	43.3	48.14
VIT_18s0089g00190.t01	Wine grape	extracellular, vacuole	42.86	47.76
VIT_04s0023g02130.t01	Wine grape	vacuole	45.54	47.11
VIT_18s0001g12830.t01	Wine grape	extracellular, vacuole	45.54	47.11
VIT_18s0089g00200.t01	Wine grape	vacuole	43.3	46.86
Bra005662.1-P	Field mustard	nucleus	66.29	46.85
HORVU6Hr1G009620.1	Barley	cytosol	15.62	44.59
VIT_18s0089g00140.t01	Wine grape	cytosol, peroxisome, plastid, vacuole	41.29	44.15
VIT_12s0028g03610.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	42.19	43.75
VIT_00s0187g00280.t01	Wine grape	golgi, vacuole	39.51	39.42
VIT_00s0187g00320.t01	Wine grape	golgi, vacuole	39.06	38.8
CDY61603	Canola	nucleus	57.37	36.45

Protein Annotations

EntrezGene:100243039	wikigene:100243039	MapMan:21.2.3.2.2	Gene3D:3.20.20.80	ProteinID:CCB44759	ProteinID:CCB44759.1
UniProt:F6GXV8	EMBL:FN594967	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0016798
GO:GO:0016985	GO:GO:0046355	InterPro:Glyco_hydro_5	InterPro:Glycoside_hydrolase_SF	EntrezGene:LOC100243039	wikigene:LOC100243039
PFAM:PF00150	PANTHER:PTHR31451	PANTHER:PTHR31451:SF17	SUPFAM:SSF51445	TIGR:TC65775	TIGR:TC68226
UniParc:UPI0002109D07	ArrayExpress:VIT_08s0058g01480	EnsemblPlantsGene:VIT_08s0058g01480	EnsemblPlants:VIT_08s0058g01480.t01	unigene:Vvi.8107	RefSeq:XP_002273389
RefSeq:XP_002273389.1	:	:	:	:	:

Description

No Description!

Coordinates

chr8:-:10916755..10921854

Molecular Weight (calculated)

51120.5 Da

IEP (calculated)

6.739

GRAVY (calculated)

-0.327

Length

448 amino acids

Sequence
(BLAST)

001: MNHDVHLLAS KAFKKLQWAQ PGPTSIFIRV IQTLRVYEMG DFGDEPWTMV QKKGNQFVVN DKPFYVNGFN TYWLMVFAVD QSTRGKVSEV FQQAASVGLT
101: VCRTWAFNDG QWRALQKSPS VYDEEVFKAL DFVVSEARKY KIRLILSLSN NWEGYGGKAQ YVKWGKEAGL NLTSDDDFFS HPTLRSYYKA NVKTVLNRVN
201: TFTNITYKED PTIFAWELMN EPRCTSDPTG DKLQSWIQEM VIYVKSMDPK HLLEIGLEGF YGPSTPDKVQ FNPNTYAQQV GTDFIRNHQV LGVDFASVHI
301: YTDSWISQSI TEAHLDFTKS WMQAHIEDSE KYLGMPVVFG EFGVSSKDNG YNSSFRDTFI STVYKILLNS TKKGGSGAGS LLWQLFPDGA DYMDDGYAIV
401: LSKSPSTSNV IALQSTRLMM FNSMCAWNCR WSCHKKHPLD AFLFHDDL

Best Arabidopsis Sequence Match ( AT5G01930.1 )
(BLAST)

001: MKDQLGFRIV LCSAVFIILT QNRALADLDS ESHEVNSESV GEEQWEMVQR KGMQFTLNGQ PFYVNGFNTY WMMTLAADNS TRGKVTEVFQ QASAVGMTVG
101: RTWAFNDGQW RALQKSPSVY DEEVFKALDF VLSEARKYKI RLILSLVNNW DAYGGKAQYV KWGNASGLNL TSDDDFFTNP TLRNFYQSHV RTVLNRVNTF
201: TNITYKNDPT IFAWELMNEP RCPSDPSGDK LQSWIQEMAV FVKSLDAKHL VEIGLEGFYG PSAPARTRFN PNPYAAQVGT DFIRNNQVLG IDFASVHVYP
301: DSWISPAVSN SFLEFTSSWM QAHVEDAEMY LGMPVLFTEF GVSAHDPGFN TSFRDMMLNT VYKMTLNSTR KGGAGAGSLV WQVFPQGAEF MDDGYAVYLT
401: RAHTASKIIS LQSKRLAIFN SLCSWRCRWG CKKKNQTALD ALLSHDEL

Arabidopsis Description

MAN6Mannan endo-1,4-beta-mannosidase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZV3]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.