Factsheet for PGSC0003DMT400080203

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 5
endoplasmic reticulum 7
vacuole 7
plasma membrane 5
golgi 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g074920.1.1	Tomato	extracellular	96.21	96.21
VIT_08s0058g01460.t01	Wine grape	cytosol, nucleus, plastid, vacuole	70.6	77.7
KRH64877	Soybean	endoplasmic reticulum	73.5	71.27
VIT_08s0058g01480.t01	Wine grape	cytosol, mitochondrion, vacuole	71.05	71.21
HORVU4Hr1G058920.3	Barley	cytosol	26.06	69.64
KRH00473	Soybean	nucleus	71.05	69.05
HORVU3Hr1G057870.3	Barley	cytosol	24.72	68.52
Os11t0118200-01	Rice	cytosol	29.84	66.34
KRH40712	Soybean	nucleus	71.71	65.85
CDY11173	Canola	endoplasmic reticulum, vacuole	64.81	65.84
AT5G01930.1	Thale cress	endoplasmic reticulum	64.81	64.96
KRH09553	Soybean	endoplasmic reticulum, plastid, vacuole	71.49	64.72
HORVU3Hr1G003960.2	Barley	cytosol	16.26	63.48
HORVU5Hr1G083060.1	Barley	cytosol, plastid, vacuole	21.38	62.34
HORVU5Hr1G083020.2	Barley	extracellular, mitochondrion, plastid, vacuole	17.82	62.02
Os12t0117300-00	Rice	cytosol	51.67	60.73
GSMUA_Achr3P09750_001	Banana	endoplasmic reticulum	61.47	59.48
HORVU6Hr1G036770.2	Barley	cytosol	16.26	58.4
GSMUA_Achr7P22010_001	Banana	cytosol	53.67	58.21
TraesCS5D01G145900.1	Wheat	cytosol	49.89	58.03
PGSC0003DMT400093759	Potato	cytosol	15.14	55.28
HORVU5Hr1G046370.1	Barley	mitochondrion	50.11	53.57
TraesCS5A01G146400.1	Wheat	mitochondrion, plasma membrane, plastid, vacuole	50.11	53.57
TraesCS5B01G145200.1	Wheat	mitochondrion, plasma membrane, vacuole	49.89	53.33
Zm00001d005052_P002	Maize	plasma membrane	50.78	52.66
EES09143	Sorghum	cytosol, plasma membrane, plastid, vacuole	49.89	52.46
PGSC0003DMT400039828	Potato	cytosol	7.35	52.38
PGSC0003DMT400092618	Potato	extracellular	14.92	51.94
PGSC0003DMT400092800	Potato	peroxisome	23.16	51.23
PGSC0003DMT400090248	Potato	cytosol	30.96	50.92
PGSC0003DMT400095096	Potato	cytosol	34.52	50.32
PGSC0003DMT400039735	Potato	cytosol	34.74	49.84
PGSC0003DMT400009479	Potato	cytosol, nucleus, peroxisome	41.2	48.81
PGSC0003DMT400039596	Potato	vacuole	35.41	47.6
Bra005662.1-P	Field mustard	nucleus	66.15	46.85
PGSC0003DMT400009055	Potato	extracellular, golgi, vacuole	43.21	44.8
PGSC0003DMT400083217	Potato	cytosol	18.04	43.78
PGSC0003DMT400039582	Potato	vacuole	20.94	43.12
PGSC0003DMT400034535	Potato	cytosol, nucleus, vacuole	37.42	42.53
HORVU6Hr1G009620.1	Barley	cytosol	14.7	42.04
PGSC0003DMT400047236	Potato	vacuole	40.09	40.82
PGSC0003DMT400034196	Potato	golgi, mitochondrion, plastid, vacuole	39.42	39.86
CDY61603	Canola	nucleus	57.91	36.88
PGSC0003DMT400034545	Potato	cytosol	14.7	32.2

Protein Annotations

EntrezGene:102591414	MapMan:21.2.3.2.2	Gene3D:3.20.20.80	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553
GO:GO:0005975	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009791	GO:GO:0009845
GO:GO:0016787	GO:GO:0016798	InterPro:Glyco_hydro_5	InterPro:Glycoside_hydrolase_SF	UniProt:M1D353	PFAM:PF00150
EnsemblPlantsGene:PGSC0003DMG400031221	PGSC:PGSC0003DMG400031221	EnsemblPlants:PGSC0003DMT400080203	PANTHER:PTHR31451	PANTHER:PTHR31451:SF17	SUPFAM:SSF51445
SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI00029664D7	RefSeq:XP_006362338.1	:	:

Description

Hydrolase, hydrolyzing O-glycosyl compounds [Source:PGSC_GENE;Acc:PGSC0003DMG400031221]

Coordinates

chr10:+:48732333..48736251

Molecular Weight (calculated)

50412.4 Da

IEP (calculated)

6.322

GRAVY (calculated)

-0.269

Length

449 amino acids

Sequence
(BLAST)

001: MVSHKQSFSS KFIFLAASFV LVVFIKNANS APFDEAGNEG EMEDGAAWTM VQKSGDQFLL NGQPFYVNGF NTYWLMVFAA DQSTRGKVTE VFQQASAVGL
101: SVCRTWAFND GQWRALQKTP AVYDEDVFKA LDFVVSEAKK FKIRLILSLV NNWEAYGGKS QYVKWGKAAG LNLTSDDDFF SHPTLKSYYK AHVKAVLNRV
201: NTFTNMTYKD DPTIFGWELM NEPRCESDPS GDKLHAWIEE MAVYVKTIDP KHLVQIGLEG FYGPSTPNKA QINPNSYAQQ VGTDFIRNHQ VLGVDFASAH
301: IYPDSWISQE ISDAHIGFTK TWMQAHIDDA ENYLNMPVVF SEFGVSAKDP GYNSTFRDSL ISTVYTILLN STKKGGAGGG SLLWQVFPEG TDYMDDGYAI
401: VLSKALSTSN IVSLHSKRLN TYNSLCSWKC HWGCKKKHAL DNFQLHEEL

Best Arabidopsis Sequence Match ( AT5G01930.1 )
(BLAST)

001: MKDQLGFRIV LCSAVFIILT QNRALADLDS ESHEVNSESV GEEQWEMVQR KGMQFTLNGQ PFYVNGFNTY WMMTLAADNS TRGKVTEVFQ QASAVGMTVG
101: RTWAFNDGQW RALQKSPSVY DEEVFKALDF VLSEARKYKI RLILSLVNNW DAYGGKAQYV KWGNASGLNL TSDDDFFTNP TLRNFYQSHV RTVLNRVNTF
201: TNITYKNDPT IFAWELMNEP RCPSDPSGDK LQSWIQEMAV FVKSLDAKHL VEIGLEGFYG PSAPARTRFN PNPYAAQVGT DFIRNNQVLG IDFASVHVYP
301: DSWISPAVSN SFLEFTSSWM QAHVEDAEMY LGMPVLFTEF GVSAHDPGFN TSFRDMMLNT VYKMTLNSTR KGGAGAGSLV WQVFPQGAEF MDDGYAVYLT
401: RAHTASKIIS LQSKRLAIFN SLCSWRCRWG CKKKNQTALD ALLSHDEL

Arabidopsis Description

MAN6Mannan endo-1,4-beta-mannosidase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZV3]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.