Factsheet for PGSC0003DMT400095096

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
vacuole 1
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400090248	Potato	cytosol	67.86	76.56
Solyc01g008720.1.1	Tomato	extracellular, golgi, vacuole	93.83	72.07
PGSC0003DMT400039828	Potato	cytosol	11.04	53.97
PGSC0003DMT400092800	Potato	peroxisome	32.14	48.77
PGSC0003DMT400039735	Potato	cytosol	49.35	48.56
PGSC0003DMT400083217	Potato	cytosol	28.9	48.11
PGSC0003DMT400009479	Potato	cytosol, nucleus, peroxisome	56.82	46.17
GSMUA_Achr6P30560_001	Banana	vacuole	61.69	45.67
KRH33420	Soybean	extracellular, golgi	49.35	44.71
KXG31170	Sorghum	golgi, vacuole	59.42	44.31
KRG96685	Soybean	golgi, vacuole	59.09	43.44
KRG96633	Soybean	nucleus	57.14	42.93
KRH68364	Soybean	vacuole	57.14	42.93
Bra033312.1-P	Field mustard	golgi, vacuole	56.82	42.58
PGSC0003DMT400093759	Potato	cytosol	16.88	42.28
CDX89985	Canola	golgi, vacuole	56.17	42.09
KRH68408	Soybean	vacuole	55.52	41.2
CDY15229	Canola	golgi, vacuole	54.22	40.93
TraesCS6D01G312600.1	Wheat	vacuole	53.57	39.95
PGSC0003DMT400009055	Potato	extracellular, golgi, vacuole	55.84	39.72
TraesCS6B01G363900.1	Wheat	endoplasmic reticulum, extracellular, vacuole	53.25	39.71
TraesCS6B01G363800.1	Wheat	golgi, vacuole	51.62	39.55
PGSC0003DMT400039596	Potato	vacuole	42.86	39.52
TraesCS6A01G333300.1	Wheat	golgi, vacuole	54.55	39.44
TraesCS6A01G333500.1	Wheat	extracellular, vacuole	52.6	39.23
TraesCS6D01G311900.1	Wheat	vacuole	54.22	39.2
AT1G02310.2	Thale cress	golgi, vacuole	54.22	38.75
TraesCS6B01G363700.1	Wheat	golgi, vacuole	53.57	38.64
HORVU0Hr1G017220.2	Barley	mitochondrion, vacuole	53.25	37.88
TraesCS6D01G312500.1	Wheat	golgi, vacuole	51.62	37.86
TraesCS6A01G333400.1	Wheat	golgi, vacuole	51.95	37.74
GSMUA_Achr3P12210_001	Banana	cytosol	56.49	36.55
PGSC0003DMT400034535	Potato	cytosol, nucleus, vacuole	46.1	35.95
Zm00001d052158_P001	Maize	golgi, vacuole	50.65	35.21
PGSC0003DMT400080203	Potato	endoplasmic reticulum	50.32	34.52
PGSC0003DMT400034545	Potato	cytosol	22.08	33.17
PGSC0003DMT400047236	Potato	vacuole	46.43	32.43
PGSC0003DMT400034196	Potato	golgi, mitochondrion, plastid, vacuole	46.1	31.98
PGSC0003DMT400039582	Potato	vacuole	18.83	26.61
PGSC0003DMT400092618	Potato	extracellular	11.04	26.36
Os02t0766900-00	Rice	extracellular, golgi, vacuole	27.92	20.14

Protein Annotations

EnsemblPlants:PGSC0003DMT400095096	EnsemblPlantsGene:PGSC0003DMG400044667	Gene3D:3.20.20.80	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	InterPro:Glyco_hydro_5
InterPro:Glycoside_hydrolase_SF	PANTHER:PTHR31451	PANTHER:PTHR31451:SF20	PFAM:PF00150	PGSC:PGSC0003DMG400044667	SUPFAM:SSF51445
UniParc:UPI000296A748	UniProt:M1DVK7	MapMan:21.2.3.2.2	:	:	:

Description

Mannan endo-1,4-beta-mannosidase 4 [Source:PGSC_GENE;Acc:PGSC0003DMG400044667]

Coordinates

chr1:+:4942324..4945397

Molecular Weight (calculated)

34525.6 Da

IEP (calculated)

4.679

GRAVY (calculated)

-0.391

Length

308 amino acids

Sequence
(BLAST)

001: MNVARTWAFA DGGSKPLQSA PGVYNEQMFQ GLDFVISEAK NYGIHLILSL VDNFEAFGGK KQYVAWAVQK GQQLTSDDDF FTNPMDVLTR VNKITNVAYK
101: DDPTILSWEL INEPRCPSDL SGKTIQNWIT EMAGHLRSID TNHLLEIGLE GFYGNDKKQY NPNSINYGTD FISNNQITGI DFTTIHIYPD QWLPGATSEA
201: QDKWASQWIQ AHIDDSKLLK KPLLIGEFGK SSNTTGYNIE MRDNYFGKIY GNIFNCAKNG DPCGGGLFWQ LLDQGMETYG DGYEVVLQAS PSTDRVILLQ
301: SLRLSKLS

Best Arabidopsis Sequence Match ( AT1G02310.1 )
(BLAST)

001: MLNILPFFLF FLPFLIGNNR ICVAVKTGFV GRNGTQFVLN GEQVYLNGFN AYWMMTTAAD TASKGRATVT TALRQASAVG MNVARIWGFN EGDYIPLQIS
101: PGSYSEDVFK GLDFVVYEAG RFNIKLIISL VNNFEDYGGR KKYVEWAGLD EPDEFYTNSA VKQFYKNHVK TVLTRKNTIT GRMYKDDPTI FSWELINEPR
201: CNDSTASNIL QDWVKEMASY VKSIDSNHLL EIGLEGFYGE SIPERTVYNP GGRVLTGTDF ITNNQIPDID FATIHIYPDS WLPLQSSRTG EQDTFVDRWI
301: GAHIEDCDNI IKKPLLITEF GKSSKYPGFS LEKRNKFFQR VYDVIYDSAR AGGSCTGGVF WQLTTNRTGL LGDGYEVFMQ AGPNTTAQLI ADQSSKLKNL
401: KYPPLVTHSA E

Arabidopsis Description

MAN1Glycosyl hydrolase superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8AQX8]
SUBAcon: [golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.