Factsheet for PGSC0003DMT400034535

Subcellular Localization

min:

: max

Winner_takes_all: vacuole, nucleus, cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g012190.1.1	Tomato	golgi, vacuole	96.71	83.59
PGSC0003DMT400034545	Potato	cytosol	42.78	82.44
GSMUA_Achr5P22340_001	Banana	cytosol	62.53	62.69
VIT_00s0187g00280.t01	Wine grape	golgi, vacuole	68.35	60.13
GSMUA_Achr8P24410_001	Banana	mitochondrion	53.16	59.83
VIT_00s0187g00320.t01	Wine grape	golgi, vacuole	68.1	59.65
TraesCS7D01G225500.1	Wheat	vacuole	57.22	52.68
TraesCS7B01G190600.1	Wheat	vacuole	56.46	51.03
HORVU7Hr1G045910.1	Barley	vacuole	56.2	50.8
PGSC0003DMT400093759	Potato	cytosol	15.7	50.41
Os06t0311600-01	Rice	golgi, vacuole	55.7	50.0
Zm00001d045873_P002	Maize	vacuole	54.43	49.43
PGSC0003DMT400039828	Potato	cytosol	7.85	49.21
OQU76322	Sorghum	golgi, vacuole	54.43	49.09
TraesCS7A01G223800.1	Wheat	cytosol	48.1	47.86
PGSC0003DMT400092800	Potato	peroxisome	23.8	46.31
PGSC0003DMT400090248	Potato	cytosol	31.9	46.15
PGSC0003DMT400095096	Potato	cytosol	35.95	46.1
PGSC0003DMT400039735	Potato	cytosol	35.7	45.05
PGSC0003DMT400034196	Potato	golgi, mitochondrion, plastid, vacuole	49.87	44.37
PGSC0003DMT400092618	Potato	extracellular	14.43	44.19
PGSC0003DMT400047236	Potato	vacuole	49.11	43.99
PGSC0003DMT400009479	Potato	cytosol, nucleus, peroxisome	42.03	43.8
PGSC0003DMT400039596	Potato	vacuole	35.7	42.22
PGSC0003DMT400009055	Potato	extracellular, golgi, vacuole	44.56	40.65
PGSC0003DMT400083217	Potato	cytosol	18.23	38.92
PGSC0003DMT400080203	Potato	endoplasmic reticulum	42.53	37.42
PGSC0003DMT400039582	Potato	vacuole	20.0	36.24

Protein Annotations

EnsemblPlants:PGSC0003DMT400034535	EnsemblPlantsGene:PGSC0003DMG400013275	Gene3D:3.20.20.80	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	InterPro:Glyco_hydro_5
InterPro:Glycoside_hydrolase_SF	PANTHER:PTHR31451	PANTHER:PTHR31451:SF16	PFAM:PF00150	PGSC:PGSC0003DMG400013275	SEG:seg
SUPFAM:SSF51445	UniParc:UPI000296D058	UniProt:M1B0V3	MapMan:21.2.3.2.2	:	:

Description

Hydrolase, hydrolyzing O-glycosyl compounds [Source:PGSC_GENE;Acc:PGSC0003DMG400013275]

Coordinates

chr11:-:586619..591101

Molecular Weight (calculated)

44429.1 Da

IEP (calculated)

9.287

GRAVY (calculated)

-0.163

Length

395 amino acids

Sequence
(BLAST)

001: MGFVGVNETR FFIKNENPKT QSLTFQEFYI NGWNSYWLME ESVWVSSRFR VSKMLKRGAE MGLSVCRTWA FSDGGGPNDL QLLPGVFNER VFKGLDFVIV
101: EARKHNIRLI LSLVNNLKAY GGTAQYMRWA REAGTNVSSS RDAFFTNPTV KAYYKSFVKA IVTRKNSISG VKYSEEPAIF AWELINEPRC ESSSSAAALQ
201: AWIAEMAGFV KSLDQKHLVT IGLEGFYGVE KTGNVGLNPG KWAASLGVDF IENSAIENID FTSVHAYPHS WIKGGINSDA RVDFLSHWVD SHISEAEKIL
301: KKPVLFTEVG FPSSIQKNGL YDRNIFLKIV YDKIYESAKK KKAGAGALVW QLLVEGMERY GDQFSFIAWK HPSTYKLMVE QSCRLLNISC LGNAS

Best Arabidopsis Sequence Match ( AT4G28320.1 )
(BLAST)

001: MVPTRNRPML RILGFFICAA FIYLSFRDLW LNHKGKAKLG FVKRNGTQFV VDDKPLYVNG WNSYWFMDHA VDEHSRNLVG EMLEAGAKMG LTVCRTWAFN
101: DGGYNALQIS PGRFDERVFQ ALDHVIAEAR KHDVRLLLSL VNNLQAYGGK TQYVKWAWQE GVGLSSSNDS FFFDPSIRNY FKNYLKVLLT RKNSVTGIEY
201: RNDPTIFAWE LINEPRCTTD VSGKTLQDWI DEMTGFIKSI DDKHLLTVGL EGFYGPNSPK GLTVNPEQWA SQLGTDFVQN SNSSNIDFAS VHIYPDHWFH
301: NQTFEEKLKF VVKWMQSHIE DGLKELKKPV LFTEFGLSNQ NKDYEPSQRD KFYRIIFDVV YKSAKRKKSG AGTLVWQLFM EGMETFNDDF GIVPHEQDSI
401: YKLMIEQSCR LGKVTGRLKE QKLKELCSHR H

Arabidopsis Description

MAN5Mannan endo-1,4-beta-mannosidase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0H6]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.