Factsheet for GSMUA_Achr5P22340_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P24410_001	Banana	mitochondrion	70.81	79.49
TraesCS7D01G225500.1	Wheat	vacuole	69.8	64.1
PGSC0003DMT400034535	Potato	cytosol, nucleus, vacuole	62.69	62.53
TraesCS7B01G190600.1	Wheat	vacuole	69.29	62.47
HORVU7Hr1G045910.1	Barley	vacuole	68.78	62.01
OQU76322	Sorghum	golgi, vacuole	68.53	61.64
Os06t0311600-01	Rice	golgi, vacuole	68.27	61.14
Zm00001d045873_P002	Maize	vacuole	67.26	60.92
TraesCS7A01G223800.1	Wheat	cytosol	59.14	58.69
VIT_00s0187g00280.t01	Wine grape	golgi, vacuole	64.97	57.02
VIT_00s0187g00320.t01	Wine grape	golgi, vacuole	64.47	56.32
PGSC0003DMT400034545	Potato	cytosol	27.66	53.17
Solyc11g012190.1.1	Tomato	golgi, vacuole	61.42	52.95
GSMUA_Achr1P04970_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	55.33	50.0
GSMUA_Achr5P09360_001	Banana	endoplasmic reticulum, extracellular, vacuole	47.97	48.21
GSMUA_Achr8P20030_001	Banana	golgi, plastid, vacuole	49.75	43.75
GSMUA_Achr6P27200_001	Banana	golgi, vacuole	44.16	42.65
GSMUA_Achr4P07870_001	Banana	mitochondrion	41.37	42.34
GSMUA_Achr10P...	Banana	nucleus, plasma membrane, plastid, vacuole	50.76	41.49
GSMUA_Achr6P12740_001	Banana	extracellular, vacuole	26.4	41.43
GSMUA_Achr4P02940_001	Banana	golgi, vacuole	44.42	41.08
GSMUA_Achr9P06930_001	Banana	extracellular	43.91	40.42
GSMUA_Achr6P30560_001	Banana	vacuole	42.39	40.14
GSMUA_Achr7P22010_001	Banana	cytosol	41.88	39.86
GSMUA_Achr6P12730_001	Banana	golgi, vacuole	40.86	39.17
GSMUA_Achr9P08250_001	Banana	vacuole	41.88	36.67
GSMUA_Achr3P09750_001	Banana	endoplasmic reticulum	42.39	35.99
GSMUA_Achr6P28970_001	Banana	extracellular, golgi	20.05	35.91
GSMUA_Achr3P12210_001	Banana	cytosol	42.64	35.29

Protein Annotations

EnsemblPlants:GSMUA_Achr5P22340_001	EnsemblPlants:GSMUA_Achr5T22340_001	EnsemblPlantsGene:GSMUA_Achr5G22340_001	Gene3D:3.20.20.80	GO:GO:0003674	GO:GO:0003824
GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798
InterPro:Glyco_hydro_5	InterPro:Glycoside_hydrolase_SF	PANTHER:PTHR31451	PANTHER:PTHR31451:SF1	PFAM:PF00150	SUPFAM:SSF51445
UniParc:UPI0002960BF7	UniProt:M0T0Q9	MapMan:21.2.3.2.2	:	:	:

Description

Mannan endo-1,4-beta-mannosidase 6 [Source:GMGC_GENE;Acc:GSMUA_Achr5G22340_001]

Coordinates

chr5:-:24428140..24431201

Molecular Weight (calculated)

44444.5 Da

IEP (calculated)

7.054

GRAVY (calculated)

-0.337

Length

394 amino acids

Sequence
(BLAST)

001: MGFVGRNGTR FIDLEDGSPA YVNGWNSYWL MSSDSSDRVV EMLRRGRAMG MSVCRTWAFS DGGPNALQIY PGHFDERIFQ ALDFVIYQAR KHYIRLILCL
101: VNNLGAFGGK SQYVRWAQAS GINVSTSTDP FFSHPTIKGY YKDYVKAIIS RKNTYSGIRY RDEPAIFAWE LINEPRCEYN SSGPLLQAWI AEMASYVKSL
201: DEKHLVTVGL EGFYGPARND RLGANPGSWA ASLGSDFIQN SAIENIDFAS VHAYPDSWIP KASLEEKVEY LSSWVDSHVN DSEHVLKKPV LFSEVGSHLR
301: VKKNGTYDRD ILLKIVYDKV YESAKKGQAA AGALIWQLMV EGMQSYQDEF SLVASEHPST YKLIAQQSCR LRNLHMTKDN TSREVVQSCL EPPS

Best Arabidopsis Sequence Match ( AT4G28320.1 )
(BLAST)

001: MVPTRNRPML RILGFFICAA FIYLSFRDLW LNHKGKAKLG FVKRNGTQFV VDDKPLYVNG WNSYWFMDHA VDEHSRNLVG EMLEAGAKMG LTVCRTWAFN
101: DGGYNALQIS PGRFDERVFQ ALDHVIAEAR KHDVRLLLSL VNNLQAYGGK TQYVKWAWQE GVGLSSSNDS FFFDPSIRNY FKNYLKVLLT RKNSVTGIEY
201: RNDPTIFAWE LINEPRCTTD VSGKTLQDWI DEMTGFIKSI DDKHLLTVGL EGFYGPNSPK GLTVNPEQWA SQLGTDFVQN SNSSNIDFAS VHIYPDHWFH
301: NQTFEEKLKF VVKWMQSHIE DGLKELKKPV LFTEFGLSNQ NKDYEPSQRD KFYRIIFDVV YKSAKRKKSG AGTLVWQLFM EGMETFNDDF GIVPHEQDSI
401: YKLMIEQSCR LGKVTGRLKE QKLKELCSHR H

Arabidopsis Description

MAN5Mannan endo-1,4-beta-mannosidase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0H6]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.