Factsheet for GSMUA_Achr6P28970_001

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 6
cytosol 2
peroxisome 1
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	cytosol, extracellular, mitochondrion, peroxisome, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400093759	Potato	cytosol	34.55	61.79
PGSC0003DMT400092618	Potato	extracellular	33.64	57.36
PGSC0003DMT400039582	Potato	vacuole	41.36	41.74
VIT_18s0089g00180.t01	Wine grape	vacuole	51.36	33.33
Solyc12g013770.1.1	Tomato	vacuole	46.82	32.59
PGSC0003DMT400039596	Potato	vacuole	45.45	29.94
GSMUA_Achr6P12740_001	Banana	extracellular, vacuole	33.64	29.48
GSMUA_Achr9P08250_001	Banana	vacuole	58.18	28.44
VIT_18s0089g00170.t01	Wine grape	vacuole	51.82	28.29
Solyc06g064520.2.1	Tomato	vacuole	52.27	27.78
VIT_18s0089g00160.t01	Wine grape	vacuole	50.45	27.54
VIT_18s0089g00190.t01	Wine grape	extracellular, vacuole	50.0	27.36
KRH39855	Soybean	vacuole	49.55	26.78
VIT_18s0089g00140.t01	Wine grape	cytosol, peroxisome, plastid, vacuole	50.91	26.73
KRH23949	Soybean	vacuole	48.64	26.29
GSMUA_Achr6P12730_001	Banana	golgi, vacuole	47.27	25.3
GSMUA_Achr6P27200_001	Banana	golgi, vacuole	44.09	23.77
GSMUA_Achr6P30560_001	Banana	vacuole	44.09	23.32
PGSC0003DMT400039735	Potato	cytosol	31.36	22.04
GSMUA_Achr7P22010_001	Banana	cytosol	41.36	21.98
PGSC0003DMT400092800	Potato	peroxisome	19.55	21.18
GSMUA_Achr9P06930_001	Banana	extracellular	40.45	20.79
GSMUA_Achr4P02940_001	Banana	golgi, vacuole	40.0	20.66
GSMUA_Achr8P24410_001	Banana	mitochondrion	32.27	20.23
GSMUA_Achr5P09360_001	Banana	endoplasmic reticulum, extracellular, vacuole	35.91	20.15
GSMUA_Achr5P22340_001	Banana	cytosol	35.91	20.05
GSMUA_Achr3P12210_001	Banana	cytosol	43.18	19.96
GSMUA_Achr4P07870_001	Banana	mitochondrion	34.09	19.48
GSMUA_Achr8P20030_001	Banana	golgi, plastid, vacuole	39.09	19.2
GSMUA_Achr3P09750_001	Banana	endoplasmic reticulum	40.45	19.18
GSMUA_Achr1P04970_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	36.82	18.58
GSMUA_Achr10P...	Banana	nucleus, plasma membrane, plastid, vacuole	37.73	17.22
PGSC0003DMT400039828	Potato	cytosol	1.36	4.76
PGSC0003DMT400083217	Potato	cytosol	2.73	3.24
Solyc12g013670.1.1	Tomato	cytosol	1.82	2.26
Solyc12g013750.1.1	Tomato	cytosol	0.0	0.0
Solyc12g013760.1.1	Tomato	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:GSMUA_Achr6P28970_001	EnsemblPlants:GSMUA_Achr6T28970_001	EnsemblPlantsGene:GSMUA_Achr6G28970_001	Gene3D:3.20.20.80	InterPro:Glycoside_hydrolase_SF	PANTHER:PTHR31451
PANTHER:PTHR31451:SF34	SEG:seg	SignalP:SignalP-TM	SUPFAM:SSF51445	TMHMM:TMhelix	UniParc:UPI0002964D04
UniProt:M0TB42	MapMan:21.2.3.2.2	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G28970_001]

Coordinates

chr6:-:29231475..29232556

Molecular Weight (calculated)

24156.6 Da

IEP (calculated)

7.894

GRAVY (calculated)

-0.215

Length

220 amino acids

Sequence
(BLAST)

001: MASLACALRF LLGAFACLAV AVAGSAAFVA RQGTQFVLEG SPFLFSGFNS YWMMHVAAEP AERAKVTEVL REAAAGGLTV CRTWAFSDGG DQPLRVSQGK
101: YDERVFQGLD FVIWEAQKRG VRLILSLVNN VKDFGGRAQN VQWARDAGVA VNGEDDLYTN PVVKGYYKNH IQSVDTNQQH HQRSLQRRPN DHGMGTNQRA
201: SLSSRLVLEN CACLGSRDDE

Best Arabidopsis Sequence Match ( AT3G10890.1 )
(BLAST)

001: MKCLCFVVLL AILIAQNSSD LGVKSASSDG FVSRKGVQFI LNGKPFYANG FNAYWLAYEA TDSTTRFKIT YVFQNATIHD LTIVRTWGFR DGGYRALQIA
101: PGVYDEKTFQ GLDFAIAEAK RLGIKMIITF VNNYSDFGGR KQYVDWAKNT GQNVSSDDDF YTNPLVKQYY KNHVKTMVNR VNTFTKVEYK DEPTIMGWEL
201: MNEPQCRADP SGKTLTAWMN EMALYVKSVD SKHLLSTGLE GFYGDSSPQR KTSLNPVAAN VLGTDFIANH KLDAIDFASI HSYPDLWFPN LDEKSRLNLL
301: RKWLECHLED AQNILKKPLI LGEFGKPTNT PGYTQAQRDA VFNATFDTIY ESAEKGGPAA GALFWHVISD GMNNFKDPLS IVLSENSTTV NIITEESRKL
401: GLIRGKGKLS KTKI

Arabidopsis Description

MAN3Mannan endo-1,4-beta-mannosidase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SG94]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.