Factsheet for PGSC0003DMT400092800

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 2
peroxisome 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039828	Potato	cytosol	30.05	96.83
PGSC0003DMT400039735	Potato	cytosol	95.57	61.98
PGSC0003DMT400039596	Potato	vacuole	93.6	56.89
Solyc12g013670.1.1	Tomato	cytosol	44.34	50.85
PGSC0003DMT400083217	Potato	cytosol	42.86	47.03
Solyc12g013750.1.1	Tomato	cytosol	23.15	45.19
PGSC0003DMT400093759	Potato	cytosol	25.12	41.46
PGSC0003DMT400092618	Potato	extracellular	24.14	37.98
PGSC0003DMT400090248	Potato	cytosol	50.25	37.36
GSMUA_Achr6P12740_001	Banana	extracellular, vacuole	44.83	36.26
VIT_18s0089g00200.t01	Wine grape	vacuole	72.91	35.75
KRH39855	Soybean	vacuole	70.44	35.14
KRH23949	Soybean	vacuole	69.46	34.64
GSMUA_Achr9P08250_001	Banana	vacuole	71.43	32.22
PGSC0003DMT400095096	Potato	cytosol	48.77	32.14
PGSC0003DMT400009479	Potato	cytosol, nucleus, peroxisome	59.61	31.93
GSMUA_Achr6P12730_001	Banana	golgi, vacuole	59.61	29.44
PGSC0003DMT400039582	Potato	vacuole	29.06	27.06
PGSC0003DMT400009055	Potato	extracellular, golgi, vacuole	55.17	25.87
PGSC0003DMT400034535	Potato	cytosol, nucleus, vacuole	46.31	23.8
PGSC0003DMT400080203	Potato	endoplasmic reticulum	51.23	23.16
PGSC0003DMT400034196	Potato	golgi, mitochondrion, plastid, vacuole	49.26	22.52
PGSC0003DMT400047236	Potato	vacuole	48.28	22.22
PGSC0003DMT400034545	Potato	cytosol	20.2	20.0
GSMUA_Achr6P28970_001	Banana	extracellular, golgi	21.18	19.55
Solyc12g013760.1.1	Tomato	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400092800	EnsemblPlantsGene:PGSC0003DMG400042371	Gene3D:3.20.20.80	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	InterPro:Glyco_hydro_5
InterPro:Glycoside_hydrolase_SF	PANTHER:PTHR31451	PANTHER:PTHR31451:SF15	PFAM:PF00150	PGSC:PGSC0003DMG400042371	SUPFAM:SSF51445
UniParc:UPI0002948D3B	UniProt:M1DQK1	MapMan:21.2.3.2.2	:	:	:

Description

Mannan endo-1,4-beta-mannosidase 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400042371]

Coordinates

chr12:-:765600..766748

Molecular Weight (calculated)

23094.2 Da

IEP (calculated)

4.809

GRAVY (calculated)

-0.397

Length

203 amino acids

Sequence
(BLAST)

001: MHVSADPIER YKVTEVLKDA STTGLSICRT WAFSDGGDRA LQISPGVYDE RVFQRVVTRL NSITKVAYKD DPTIMAWELM NEPRDQADYS GKTVNGWVQE
101: MASFVKSLDN KHLLEVGMEG FYGDSIPERK TVNPGYQVGT DFISNHLINE IDFATIHAYT DQWVSGQSDE AQLVWMEKWI TSHWEDARNI LKKPLVLAEF
201: GKV

Best Arabidopsis Sequence Match ( AT1G02310.1 )
(BLAST)

001: MLNILPFFLF FLPFLIGNNR ICVAVKTGFV GRNGTQFVLN GEQVYLNGFN AYWMMTTAAD TASKGRATVT TALRQASAVG MNVARIWGFN EGDYIPLQIS
101: PGSYSEDVFK GLDFVVYEAG RFNIKLIISL VNNFEDYGGR KKYVEWAGLD EPDEFYTNSA VKQFYKNHVK TVLTRKNTIT GRMYKDDPTI FSWELINEPR
201: CNDSTASNIL QDWVKEMASY VKSIDSNHLL EIGLEGFYGE SIPERTVYNP GGRVLTGTDF ITNNQIPDID FATIHIYPDS WLPLQSSRTG EQDTFVDRWI
301: GAHIEDCDNI IKKPLLITEF GKSSKYPGFS LEKRNKFFQR VYDVIYDSAR AGGSCTGGVF WQLTTNRTGL LGDGYEVFMQ AGPNTTAQLI ADQSSKLKNL
401: KYPPLVTHSA E

Arabidopsis Description

MAN1Glycosyl hydrolase superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8AQX8]
SUBAcon: [golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.