Factsheet for VIT_18s0089g00200.t01

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 7
plasma membrane 5
golgi 6
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039828	Potato	cytosol	12.08	79.37
PGSC0003DMT400092800	Potato	peroxisome	35.75	72.91
VIT_18s0089g00180.t01	Wine grape	vacuole	56.28	68.73
VIT_18s0089g00160.t01	Wine grape	vacuole	65.94	67.74
VIT_18s0089g00170.t01	Wine grape	vacuole	65.22	67.0
PGSC0003DMT400039735	Potato	cytosol	50.48	66.77
Solyc06g064520.2.1	Tomato	vacuole	65.7	65.7
VIT_18s0089g00190.t01	Wine grape	extracellular, vacuole	63.53	65.42
PGSC0003DMT400093759	Potato	cytosol	19.08	64.23
PGSC0003DMT400083217	Potato	cytosol	28.26	63.24
PGSC0003DMT400039596	Potato	vacuole	50.72	62.87
Solyc12g013770.1.1	Tomato	vacuole	47.58	62.34
VIT_18s0089g00140.t01	Wine grape	cytosol, peroxisome, plastid, vacuole	62.32	61.58
PGSC0003DMT400092618	Potato	extracellular	18.6	59.69
Solyc12g013670.1.1	Tomato	cytosol	25.12	58.76
Solyc12g013750.1.1	Tomato	cytosol	13.04	51.92
PGSC0003DMT400039582	Potato	vacuole	26.57	50.46
VIT_04s0023g02130.t01	Wine grape	vacuole	51.45	49.19
VIT_18s0001g12830.t01	Wine grape	extracellular, vacuole	50.72	48.5
Solyc12g013760.1.1	Tomato	cytosol	7.97	47.83
VIT_08s0058g01460.t01	Wine grape	cytosol, nucleus, plastid, vacuole	46.86	47.55
VIT_08s0058g01480.t01	Wine grape	cytosol, mitochondrion, vacuole	46.86	43.3
VIT_12s0028g03610.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	40.1	38.43
VIT_00s0187g00280.t01	Wine grape	golgi, vacuole	41.06	37.86
VIT_00s0187g00320.t01	Wine grape	golgi, vacuole	41.06	37.69

Protein Annotations

EntrezGene:100265435	wikigene:100265435	MapMan:21.2.3.2.2	Gene3D:3.20.20.80	EMBL:AM445638	ProteinID:CAN71995
ProteinID:CAN71995.1	ProteinID:CCB44158	ProteinID:CCB44158.1	UniProt:F6GW23	EMBL:FN594956	GO:GO:0003674
GO:GO:0003824	GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016787	GO:GO:0016798	GO:GO:0016985	GO:GO:0046355	InterPro:Glyco_hydro_5
InterPro:Glycoside_hydrolase_SF	EntrezGene:LOC100265435	wikigene:LOC100265435	PFAM:PF00150	PANTHER:PTHR31451	PANTHER:PTHR31451:SF34
SUPFAM:SSF51445	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI00015CBFA3	ArrayExpress:VIT_18s0089g00200	EnsemblPlantsGene:VIT_18s0089g00200
EnsemblPlants:VIT_18s0089g00200.t01	RefSeq:XP_002269954	RefSeq:XP_002269954.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr18:-:27936394..27938714

Molecular Weight (calculated)

46566.3 Da

IEP (calculated)

8.385

GRAVY (calculated)

-0.364

Length

414 amino acids

Sequence
(BLAST)

001: MSRFHKVGYV VGVLITLALV CQARVHSHGG FVRTEGTRFV LGGSSSLFNG FNSYWMMHVA TEPSERYKVS NTFREAADAG LSVCRTWAFS DGGDRALQIS
101: PGTYDERVFQ ALDFVISEAR RYGIRLILSF VNNYKDYGGR PQYVEWARNA GVNVNGEDDF YTTPTVKEYY KNHVKRVITR FNTITRIVYK DDPTIMAWEL
201: MNEPRCQADS SEKMVNGWVQ EMASFVKSLD KNHLLEIGME GFYGDSMPEK KVNNPGYQVG TDFISNNLIK EIDFTTIHAY PDIWLSGQNE SAQMAFMQRW
301: MQSHSIDSKG ILKKPLVMAE FGKSSKGQGY SLGARDQYLS TVYQSMNNFE STGGGISGSL VWQLMAEGMD SYGDGYGIIL SQDASTRGVI SAQSHKMTTF
401: RHMLLGRKHG KSVP

Best Arabidopsis Sequence Match ( AT5G66460.1 )
(BLAST)

001: MKLLALFPFL AIVIQLSCWE LGTDALPSGG FVRTKGVQFS LNGYPYYANG FNAYWLMYVA SDPSQRSKIS TAFQDASRHG LTVARTWAFS DGGYRALQYS
101: PGSYNEDMFQ GLDFALAEAR RHGIKIILSF ANNYESFGGR KQYVDWARSR GRPVSSEDDF FTDSLVKDFY KNHIKAVLNR FNTFTKVHYK DDPTIMAWEL
201: MNEPRCPSDP SGRAIQAWIT EMAAHVKSLD RNHLLEAGLE GFYGQSSPQS KTLNPPGQFG TDFIANNRIP GIDFVTVHSY PDEWFPDSSE QSQMDFLNKW
301: LDAHIQDAQN VLHKPIILAE FGKSMKKPGY TPAQRDIVFN TVYSKIYGSA KRGGAAAGGL FWQLLVNGID NFQDGYGIIL SQSSSTVNVI SQQSRKLTLI
401: RKIFARMINV EKWKRARGQG QVGKRGHKIN N

Arabidopsis Description

MAN7MAN7 [Source:UniProtKB/TrEMBL;Acc:A0A178UNQ8]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.