Factsheet for PGSC0003DMT400092618

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400093759	Potato	cytosol	56.59	59.35
PGSC0003DMT400039582	Potato	vacuole	93.8	55.5
Solyc12g013770.1.1	Tomato	vacuole	95.35	38.92
PGSC0003DMT400039596	Potato	vacuole	96.9	37.43
GSMUA_Achr6P28970_001	Banana	extracellular, golgi	57.36	33.64
PGSC0003DMT400092800	Potato	peroxisome	37.98	24.14
PGSC0003DMT400039735	Potato	cytosol	57.36	23.64
KRH23949	Soybean	vacuole	59.69	18.92
KRH39855	Soybean	vacuole	58.91	18.67
VIT_18s0089g00200.t01	Wine grape	vacuole	59.69	18.6
GSMUA_Achr6P12740_001	Banana	extracellular, vacuole	34.88	17.93
GSMUA_Achr9P08250_001	Banana	vacuole	60.47	17.33
GSMUA_Achr6P12730_001	Banana	golgi, vacuole	52.71	16.55
PGSC0003DMT400009055	Potato	extracellular, golgi, vacuole	50.39	15.01
PGSC0003DMT400080203	Potato	endoplasmic reticulum	51.94	14.92
PGSC0003DMT400009479	Potato	cytosol, nucleus, peroxisome	43.41	14.78
PGSC0003DMT400034535	Potato	cytosol, nucleus, vacuole	44.19	14.43
PGSC0003DMT400090248	Potato	cytosol	28.68	13.55
PGSC0003DMT400034196	Potato	golgi, mitochondrion, plastid, vacuole	46.51	13.51
PGSC0003DMT400047236	Potato	vacuole	44.19	12.93
PGSC0003DMT400095096	Potato	cytosol	26.36	11.04
PGSC0003DMT400034545	Potato	cytosol	0.0	0.0
PGSC0003DMT400039828	Potato	cytosol	0.0	0.0
PGSC0003DMT400083217	Potato	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400092618	EnsemblPlantsGene:PGSC0003DMG400042189	Gene3D:3.20.20.80	InterPro:Glycoside_hydrolase_SF	PANTHER:PTHR31451	PANTHER:PTHR31451:SF15
PFscan:PS51257	PGSC:PGSC0003DMG400042189	SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF51445	TMHMM:TMhelix
UniParc:UPI000295A149	UniProt:M1DQ67	MapMan:35.1	:	:	:

Description

Mannan endo-1,4-beta-mannosidase 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400042189]

Coordinates

chr12:-:666481..666978

Molecular Weight (calculated)

14280.0 Da

IEP (calculated)

6.503

GRAVY (calculated)

0.089

Length

129 amino acids

Sequence
(BLAST)

001: MSYTKRSCIS GLFLLFLALA CEANSGFIGV KDSHFELNGS PFLFNGFNSY WLMHVAADPT ERYKGTEVLK DASTSGLSVC RTWAFSDGGD RALQISPGVY
101: DERVFQGLDF VIAEAKKYGV RLILSFVNQ

Best Arabidopsis Sequence Match ( AT5G66460.1 )
(BLAST)

001: MKLLALFPFL AIVIQLSCWE LGTDALPSGG FVRTKGVQFS LNGYPYYANG FNAYWLMYVA SDPSQRSKIS TAFQDASRHG LTVARTWAFS DGGYRALQYS
101: PGSYNEDMFQ GLDFALAEAR RHGIKIILSF ANNYESFGGR KQYVDWARSR GRPVSSEDDF FTDSLVKDFY KNHIKAVLNR FNTFTKVHYK DDPTIMAWEL
201: MNEPRCPSDP SGRAIQAWIT EMAAHVKSLD RNHLLEAGLE GFYGQSSPQS KTLNPPGQFG TDFIANNRIP GIDFVTVHSY PDEWFPDSSE QSQMDFLNKW
301: LDAHIQDAQN VLHKPIILAE FGKSMKKPGY TPAQRDIVFN TVYSKIYGSA KRGGAAAGGL FWQLLVNGID NFQDGYGIIL SQSSSTVNVI SQQSRKLTLI
401: RKIFARMINV EKWKRARGQG QVGKRGHKIN N

Arabidopsis Description

MAN7MAN7 [Source:UniProtKB/TrEMBL;Acc:A0A178UNQ8]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.