Factsheet for PGSC0003DMT400039596

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 7
plasma membrane 5
golgi 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400092618	Potato	extracellular	37.43	96.9
PGSC0003DMT400039828	Potato	cytosol	18.26	96.83
PGSC0003DMT400093759	Potato	cytosol	35.33	95.94
PGSC0003DMT400092800	Potato	peroxisome	56.89	93.6
Solyc12g013770.1.1	Tomato	vacuole	82.63	87.34
PGSC0003DMT400039582	Potato	vacuole	52.4	80.28
PGSC0003DMT400039735	Potato	cytosol	68.86	73.48
GSMUA_Achr6P12740_001	Banana	extracellular, vacuole	40.72	54.18
PGSC0003DMT400090248	Potato	cytosol	42.22	51.65
KRH39855	Soybean	vacuole	61.98	50.86
KRH23949	Soybean	vacuole	61.98	50.86
VIT_18s0089g00200.t01	Wine grape	vacuole	62.87	50.72
PGSC0003DMT400083217	Potato	cytosol	27.54	49.73
GSMUA_Achr9P08250_001	Banana	vacuole	62.28	46.22
GSMUA_Achr6P28970_001	Banana	extracellular, golgi	29.94	45.45
GSMUA_Achr6P12730_001	Banana	golgi, vacuole	55.09	44.77
PGSC0003DMT400009479	Potato	cytosol, nucleus, peroxisome	50.0	44.06
PGSC0003DMT400095096	Potato	cytosol	39.52	42.86
PGSC0003DMT400009055	Potato	extracellular, golgi, vacuole	51.2	39.49
PGSC0003DMT400034535	Potato	cytosol, nucleus, vacuole	42.22	35.7
PGSC0003DMT400080203	Potato	endoplasmic reticulum	47.6	35.41
PGSC0003DMT400034196	Potato	golgi, mitochondrion, plastid, vacuole	44.01	33.11
PGSC0003DMT400047236	Potato	vacuole	41.92	31.75
PGSC0003DMT400034545	Potato	cytosol	12.87	20.98

Protein Annotations

MapMan:21.2.3.2.2	Gene3D:3.20.20.80	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	InterPro:Glyco_hydro_5	InterPro:Glycoside_hydrolase_SF
UniProt:M1B8I2	PFAM:PF00150	EnsemblPlantsGene:PGSC0003DMG400015316	PGSC:PGSC0003DMG400015316	EnsemblPlants:PGSC0003DMT400039596	PFscan:PS51257
PANTHER:PTHR31451	PANTHER:PTHR31451:SF15	SUPFAM:SSF51445	SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0002960795

Description

Mannan endo-1,4-beta-mannosidase 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400015316]

Coordinates

chr12:-:746266..747605

Molecular Weight (calculated)

37979.9 Da

IEP (calculated)

5.878

GRAVY (calculated)

-0.302

Length

334 amino acids

Sequence
(BLAST)

001: MSYTKRSCIS GLFLLFLALA CEVNSGFIGV KDSHFELNGS PFLFNGFNSY WLMHVAADPT ERYKVTEVIK DASTAGLSVC RTWAFSDGGD RALQISPGVY
101: DERVFQGLDF VIAEAKKYGV RLILSFVNQW NDFGGKAQYV WSARNAGAQI SNDDEFYTHP MLKKYLKNHI EVYMGKWLRL NSITKVAYKD DPTIMAWELM
201: NEPRDQADYS GKTVNAWVQE MASFVKSLDN KHLLEVGMEG FYGDSIPERK SVNPGYQVGT DFISNHLINE IDFATIHAYT NQWVSGQSDE AQLVWMEKWI
301: TSHWEDARNI LKKPLVLAEF GKSSRGQGSR DLFE

Best Arabidopsis Sequence Match ( AT3G10890.1 )
(BLAST)

001: MKCLCFVVLL AILIAQNSSD LGVKSASSDG FVSRKGVQFI LNGKPFYANG FNAYWLAYEA TDSTTRFKIT YVFQNATIHD LTIVRTWGFR DGGYRALQIA
101: PGVYDEKTFQ GLDFAIAEAK RLGIKMIITF VNNYSDFGGR KQYVDWAKNT GQNVSSDDDF YTNPLVKQYY KNHVKTMVNR VNTFTKVEYK DEPTIMGWEL
201: MNEPQCRADP SGKTLTAWMN EMALYVKSVD SKHLLSTGLE GFYGDSSPQR KTSLNPVAAN VLGTDFIANH KLDAIDFASI HSYPDLWFPN LDEKSRLNLL
301: RKWLECHLED AQNILKKPLI LGEFGKPTNT PGYTQAQRDA VFNATFDTIY ESAEKGGPAA GALFWHVISD GMNNFKDPLS IVLSENSTTV NIITEESRKL
401: GLIRGKGKLS KTKI

Arabidopsis Description

MAN3Mannan endo-1,4-beta-mannosidase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SG94]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.