Factsheet for PGSC0003DMT400039735

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039828	Potato	cytosol	19.81	98.41
PGSC0003DMT400092800	Potato	peroxisome	61.98	95.57
PGSC0003DMT400083217	Potato	cytosol	45.37	76.76
PGSC0003DMT400039596	Potato	vacuole	73.48	68.86
PGSC0003DMT400093759	Potato	cytosol	26.84	68.29
PGSC0003DMT400092618	Potato	extracellular	23.64	57.36
KRH39855	Soybean	vacuole	66.13	50.86
KRH23949	Soybean	vacuole	65.81	50.61
VIT_18s0089g00200.t01	Wine grape	vacuole	66.77	50.48
PGSC0003DMT400095096	Potato	cytosol	48.56	49.35
PGSC0003DMT400090248	Potato	cytosol	42.17	48.35
GSMUA_Achr9P08250_001	Banana	vacuole	65.5	45.56
GSMUA_Achr6P12740_001	Banana	extracellular, vacuole	36.1	45.02
PGSC0003DMT400009479	Potato	cytosol, nucleus, peroxisome	53.04	43.8
PGSC0003DMT400039582	Potato	vacuole	30.35	43.58
GSMUA_Achr6P12730_001	Banana	golgi, vacuole	57.19	43.55
PGSC0003DMT400009055	Potato	extracellular, golgi, vacuole	53.04	38.34
PGSC0003DMT400034535	Potato	cytosol, nucleus, vacuole	45.05	35.7
PGSC0003DMT400080203	Potato	endoplasmic reticulum	49.84	34.74
PGSC0003DMT400034196	Potato	golgi, mitochondrion, plastid, vacuole	47.28	33.33
PGSC0003DMT400034545	Potato	cytosol	21.73	33.17
PGSC0003DMT400047236	Potato	vacuole	45.05	31.97
GSMUA_Achr6P28970_001	Banana	extracellular, golgi	22.04	31.36

Protein Annotations

EnsemblPlants:PGSC0003DMT400039735	EnsemblPlantsGene:PGSC0003DMG400015357	Gene3D:3.20.20.80	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553
GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	InterPro:Glyco_hydro_5
InterPro:Glycoside_hydrolase_SF	PANTHER:PTHR31451	PANTHER:PTHR31451:SF15	PFAM:PF00150	PGSC:PGSC0003DMG400015357	SUPFAM:SSF51445
UniParc:UPI0002952511	UniProt:M1B8N7	MapMan:21.2.3.2.2	:	:	:

Description

Mannan endo-1,4-beta-mannosidase 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400015357]

Coordinates

chr12:+:639833..641191

Molecular Weight (calculated)

35064.4 Da

IEP (calculated)

5.186

GRAVY (calculated)

-0.309

Length

313 amino acids

Sequence
(BLAST)

001: MHVAADPTER YKVTEVLKDA SVAGLSVCRT WAFSDGGDRA LQISPGVYDE RVFQGLDFVI AEAKKYGVRL ILSFVNQWND FGGKAQYKVV TRLNSITKVA
101: YKDDPTIMAW ELMNEPRDQA DYSGKTVNGW VQEMASFVKS LDNKHLLEVG MEGFYGDSIP ERKSVNPGYQ VGTDFISNHL INEIDFATIH AYTDQWVSGQ
201: SDDAQLVWME KWITSHWEDA RNILKKPLVL AEFGKSSRGQ GSRDIFMSSV YRNVYNLAKE GGTMGGSLVW QLMAHGMENY DDGYCIVLGQ NPSTTQIISD
301: QAHVMAALAH SFN

Best Arabidopsis Sequence Match ( AT1G02310.1 )
(BLAST)

001: MLNILPFFLF FLPFLIGNNR ICVAVKTGFV GRNGTQFVLN GEQVYLNGFN AYWMMTTAAD TASKGRATVT TALRQASAVG MNVARIWGFN EGDYIPLQIS
101: PGSYSEDVFK GLDFVVYEAG RFNIKLIISL VNNFEDYGGR KKYVEWAGLD EPDEFYTNSA VKQFYKNHVK TVLTRKNTIT GRMYKDDPTI FSWELINEPR
201: CNDSTASNIL QDWVKEMASY VKSIDSNHLL EIGLEGFYGE SIPERTVYNP GGRVLTGTDF ITNNQIPDID FATIHIYPDS WLPLQSSRTG EQDTFVDRWI
301: GAHIEDCDNI IKKPLLITEF GKSSKYPGFS LEKRNKFFQR VYDVIYDSAR AGGSCTGGVF WQLTTNRTGL LGDGYEVFMQ AGPNTTAQLI ADQSSKLKNL
401: KYPPLVTHSA E

Arabidopsis Description

MAN1Glycosyl hydrolase superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8AQX8]
SUBAcon: [golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.