Factsheet for PGSC0003DMT400093759

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
nucleus 1
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400092618	Potato	extracellular	59.35	56.59
PGSC0003DMT400039582	Potato	vacuole	90.24	50.92
Solyc12g013770.1.1	Tomato	vacuole	91.87	35.76
PGSC0003DMT400039596	Potato	vacuole	95.94	35.33
GSMUA_Achr6P28970_001	Banana	extracellular, golgi	61.79	34.55
PGSC0003DMT400039735	Potato	cytosol	68.29	26.84
PGSC0003DMT400092800	Potato	peroxisome	41.46	25.12
GSMUA_Achr6P12740_001	Banana	extracellular, vacuole	47.97	23.51
PGSC0003DMT400090248	Potato	cytosol	47.15	21.25
VIT_18s0089g00200.t01	Wine grape	vacuole	64.23	19.08
KRH23949	Soybean	vacuole	60.16	18.18
PGSC0003DMT400009479	Potato	cytosol, nucleus, peroxisome	55.28	17.94
KRH39855	Soybean	vacuole	59.35	17.94
GSMUA_Achr9P08250_001	Banana	vacuole	65.04	17.78
PGSC0003DMT400095096	Potato	cytosol	42.28	16.88
GSMUA_Achr6P12730_001	Banana	golgi, vacuole	53.66	16.06
PGSC0003DMT400034535	Potato	cytosol, nucleus, vacuole	50.41	15.7
PGSC0003DMT400080203	Potato	endoplasmic reticulum	55.28	15.14
PGSC0003DMT400009055	Potato	extracellular, golgi, vacuole	52.85	15.01
PGSC0003DMT400034196	Potato	golgi, mitochondrion, plastid, vacuole	47.15	13.06
PGSC0003DMT400047236	Potato	vacuole	44.72	12.47
PGSC0003DMT400034545	Potato	cytosol	0.0	0.0
PGSC0003DMT400039828	Potato	cytosol	0.0	0.0
PGSC0003DMT400083217	Potato	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400093759	EnsemblPlantsGene:PGSC0003DMG400043330	Gene3D:3.20.20.80	InterPro:Glycoside_hydrolase_SF	PANTHER:PTHR31451	PANTHER:PTHR31451:SF15
PGSC:PGSC0003DMG400043330	SUPFAM:SSF51445	UniParc:UPI0002960A38	UniProt:M1DSM7	MapMan:21.2.3.2.2	:

Description

Mannan endo-1,4-beta-mannosidase 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400043330]

Coordinates

chr12:-:685156..685629

Molecular Weight (calculated)

14012.5 Da

IEP (calculated)

6.092

GRAVY (calculated)

-0.393

Length

123 amino acids

Sequence
(BLAST)

001: MHVSADPTER YKVTEVLKDA STAGLSVCRT WAFSDGGDRA LQISPGVYDE RVFQGLDFVI AEAKKYGVHL ILSFVNQWND FGGKAQYVWW ARNAGAQISN
101: DDEFYTHPML KKYLKNHIEE YMG

Best Arabidopsis Sequence Match ( AT3G10890.1 )
(BLAST)

001: MKCLCFVVLL AILIAQNSSD LGVKSASSDG FVSRKGVQFI LNGKPFYANG FNAYWLAYEA TDSTTRFKIT YVFQNATIHD LTIVRTWGFR DGGYRALQIA
101: PGVYDEKTFQ GLDFAIAEAK RLGIKMIITF VNNYSDFGGR KQYVDWAKNT GQNVSSDDDF YTNPLVKQYY KNHVKTMVNR VNTFTKVEYK DEPTIMGWEL
201: MNEPQCRADP SGKTLTAWMN EMALYVKSVD SKHLLSTGLE GFYGDSSPQR KTSLNPVAAN VLGTDFIANH KLDAIDFASI HSYPDLWFPN LDEKSRLNLL
301: RKWLECHLED AQNILKKPLI LGEFGKPTNT PGYTQAQRDA VFNATFDTIY ESAEKGGPAA GALFWHVISD GMNNFKDPLS IVLSENSTTV NIITEESRKL
401: GLIRGKGKLS KTKI

Arabidopsis Description

MAN3Mannan endo-1,4-beta-mannosidase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SG94]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.