Factsheet for PGSC0003DMT400090248

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 2
mitochondrion 3
extracellular 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400095096	Potato	cytosol	76.56	67.86
Solyc01g008710.2.1	Tomato	extracellular	89.74	61.4
PGSC0003DMT400039828	Potato	cytosol	12.45	53.97
PGSC0003DMT400092800	Potato	peroxisome	37.36	50.25
PGSC0003DMT400093759	Potato	cytosol	21.25	47.15
PGSC0003DMT400009479	Potato	cytosol, nucleus, peroxisome	58.61	42.22
PGSC0003DMT400039596	Potato	vacuole	51.65	42.22
PGSC0003DMT400039735	Potato	cytosol	48.35	42.17
KXG31170	Sorghum	golgi, vacuole	60.81	40.19
GSMUA_Achr6P30560_001	Banana	vacuole	61.17	40.14
Bra033312.1-P	Field mustard	golgi, vacuole	58.97	39.17
CDX89985	Canola	golgi, vacuole	58.61	38.93
KRH33420	Soybean	extracellular, golgi	48.35	38.82
KRG96685	Soybean	golgi, vacuole	58.61	38.19
KRH68408	Soybean	vacuole	57.14	37.59
KRH68364	Soybean	vacuole	56.41	37.56
CDY15229	Canola	golgi, vacuole	56.04	37.5
KRG96633	Soybean	nucleus	56.04	37.32
TraesCS6A01G333500.1	Wheat	extracellular, vacuole	56.41	37.29
TraesCS6B01G363900.1	Wheat	endoplasmic reticulum, extracellular, vacuole	56.41	37.29
TraesCS6D01G312600.1	Wheat	vacuole	56.41	37.29
AT1G02310.2	Thale cress	golgi, vacuole	56.41	35.73
TraesCS6B01G363800.1	Wheat	golgi, vacuole	52.38	35.57
PGSC0003DMT400009055	Potato	extracellular, golgi, vacuole	56.04	35.33
TraesCS6A01G333300.1	Wheat	golgi, vacuole	54.95	35.21
TraesCS6D01G311900.1	Wheat	vacuole	54.58	34.98
TraesCS6A01G333400.1	Wheat	golgi, vacuole	53.48	34.43
TraesCS6B01G363700.1	Wheat	golgi, vacuole	53.85	34.43
HORVU0Hr1G017220.2	Barley	mitochondrion, vacuole	54.58	34.41
TraesCS6D01G312500.1	Wheat	golgi, vacuole	52.38	34.05
PGSC0003DMT400083217	Potato	cytosol	22.34	32.97
GSMUA_Achr3P12210_001	Banana	cytosol	57.14	32.77
PGSC0003DMT400034535	Potato	cytosol, nucleus, vacuole	46.15	31.9
Zm00001d052158_P001	Maize	golgi, vacuole	51.65	31.83
PGSC0003DMT400080203	Potato	endoplasmic reticulum	50.92	30.96
PGSC0003DMT400039582	Potato	vacuole	23.44	29.36
PGSC0003DMT400092618	Potato	extracellular	13.55	28.68
PGSC0003DMT400034196	Potato	golgi, mitochondrion, plastid, vacuole	46.52	28.6
PGSC0003DMT400047236	Potato	vacuole	44.69	27.66
PGSC0003DMT400034545	Potato	cytosol	16.12	21.46
Os02t0766900-00	Rice	extracellular, golgi, vacuole	32.97	21.08

Protein Annotations

MapMan:21.2.3.2.2	Gene3D:3.20.20.80	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798	InterPro:Glyco_hydro_5	InterPro:Glycoside_hydrolase_SF
UniProt:M1DJZ5	PFAM:PF00150	EnsemblPlantsGene:PGSC0003DMG400039819	PGSC:PGSC0003DMG400039819	EnsemblPlants:PGSC0003DMT400090248	PANTHER:PTHR31451
PANTHER:PTHR31451:SF18	SUPFAM:SSF51445	UniParc:UPI000296BBEB	:	:	:

Description

Mannan endo-1,4-beta-mannosidase 4 [Source:PGSC_GENE;Acc:PGSC0003DMG400039819]

Coordinates

chr1:+:4935283..4941122

Molecular Weight (calculated)

31448.2 Da

IEP (calculated)

8.813

GRAVY (calculated)

-0.516

Length

273 amino acids

Sequence
(BLAST)

001: MNVARTWAFS NGGSRPLQSA PGVYNEQMFQ GLDFVISEAK KYGIHLILSL VNNWDAFGGK KQYVEWAVQR GQKLTSDDDF FTNPMVKGFY KNNVKVVLTR
101: VNTITKVAYK DDPTILSWEL INEPRCPSDL SGKTFQNWVI EMAGYLKSID SNHLLEIGLE GFYGNNMRRY NPNSYIFGTN FISNNQVQGI DFTTIHMYPD
201: QWLPGLTQEA QDKWASQWIQ VHIDDSKWLK KPLLIAEFGK SSNTPGFLKT DSIWFGYGFI RENRRNNQTE PNR

Best Arabidopsis Sequence Match ( AT1G02310.1 )
(BLAST)

001: MLNILPFFLF FLPFLIGNNR ICVAVKTGFV GRNGTQFVLN GEQVYLNGFN AYWMMTTAAD TASKGRATVT TALRQASAVG MNVARIWGFN EGDYIPLQIS
101: PGSYSEDVFK GLDFVVYEAG RFNIKLIISL VNNFEDYGGR KKYVEWAGLD EPDEFYTNSA VKQFYKNHVK TVLTRKNTIT GRMYKDDPTI FSWELINEPR
201: CNDSTASNIL QDWVKEMASY VKSIDSNHLL EIGLEGFYGE SIPERTVYNP GGRVLTGTDF ITNNQIPDID FATIHIYPDS WLPLQSSRTG EQDTFVDRWI
301: GAHIEDCDNI IKKPLLITEF GKSSKYPGFS LEKRNKFFQR VYDVIYDSAR AGGSCTGGVF WQLTTNRTGL LGDGYEVFMQ AGPNTTAQLI ADQSSKLKNL
401: KYPPLVTHSA E

Arabidopsis Description

MAN1Glycosyl hydrolase superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8AQX8]
SUBAcon: [golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.