Factsheet for PGSC0003DMT400039582

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 7
plasma membrane 6
golgi 5
nucleus 1
peroxisome 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	cytosol, extracellular, mitochondrion, peroxisome, plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400092618	Potato	extracellular	55.5	93.8
PGSC0003DMT400093759	Potato	cytosol	50.92	90.24
Solyc12g013770.1.1	Tomato	vacuole	77.98	53.8
PGSC0003DMT400039596	Potato	vacuole	80.28	52.4
GSMUA_Achr6P28970_001	Banana	extracellular, golgi	41.74	41.36
PGSC0003DMT400039735	Potato	cytosol	43.58	30.35
GSMUA_Achr6P12740_001	Banana	extracellular, vacuole	33.95	29.48
PGSC0003DMT400092800	Potato	peroxisome	27.06	29.06
VIT_18s0089g00200.t01	Wine grape	vacuole	50.46	26.57
KRH23949	Soybean	vacuole	48.62	26.04
KRH39855	Soybean	vacuole	48.17	25.8
GSMUA_Achr6P12730_001	Banana	golgi, vacuole	44.95	23.84
PGSC0003DMT400090248	Potato	cytosol	29.36	23.44
PGSC0003DMT400009479	Potato	cytosol, nucleus, peroxisome	40.37	23.22
GSMUA_Achr9P08250_001	Banana	vacuole	47.71	23.11
PGSC0003DMT400009055	Potato	extracellular, golgi, vacuole	42.66	21.48
PGSC0003DMT400080203	Potato	endoplasmic reticulum	43.12	20.94
PGSC0003DMT400034535	Potato	cytosol, nucleus, vacuole	36.24	20.0
PGSC0003DMT400095096	Potato	cytosol	26.61	18.83
PGSC0003DMT400034196	Potato	golgi, mitochondrion, plastid, vacuole	37.16	18.24
PGSC0003DMT400047236	Potato	vacuole	34.86	17.23
PGSC0003DMT400039828	Potato	cytosol	3.21	11.11
PGSC0003DMT400083217	Potato	cytosol	6.42	7.57
PGSC0003DMT400034545	Potato	cytosol	3.21	3.41

Protein Annotations

EnsemblPlants:PGSC0003DMT400039582	EnsemblPlantsGene:PGSC0003DMG400015313	Gene3D:3.20.20.80	InterPro:Glycoside_hydrolase_SF	PANTHER:PTHR31451	PANTHER:PTHR31451:SF15
PFscan:PS51257	PGSC:PGSC0003DMG400015313	SignalP:SignalP-noTM	SUPFAM:SSF51445	TMHMM:TMhelix	UniParc:UPI0002950CFA
UniProt:M1B8H8	MapMan:21.2.3.2.2	:	:	:	:

Description

Mannan endo-1,4-beta-mannosidase 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400015313]

Coordinates

chr12:-:793375..796858

Molecular Weight (calculated)

24236.7 Da

IEP (calculated)

8.602

GRAVY (calculated)

-0.221

Length

218 amino acids

Sequence
(BLAST)

001: MSFTKRSCIS GLFLLFLALA CETNSGFIGV KDSHFELNGS PFLFNGFNSY WLMHAGADPT ERYKVTEVLK DASTACLSVC HTWAFSDGGD RALQISPGVY
101: DERVFQGLDF VIAEAKKYGV RLILSFVNQW NDFGGKTKYV WWARNAGAQI SNDDEIYTHP MLKKYLKNHI EVSAELRKPG QGFAWGQQWS SSAGPAQGVG
201: SGRDKLGIRE SSKVLRSL

Best Arabidopsis Sequence Match ( AT3G10890.1 )
(BLAST)

001: MKCLCFVVLL AILIAQNSSD LGVKSASSDG FVSRKGVQFI LNGKPFYANG FNAYWLAYEA TDSTTRFKIT YVFQNATIHD LTIVRTWGFR DGGYRALQIA
101: PGVYDEKTFQ GLDFAIAEAK RLGIKMIITF VNNYSDFGGR KQYVDWAKNT GQNVSSDDDF YTNPLVKQYY KNHVKTMVNR VNTFTKVEYK DEPTIMGWEL
201: MNEPQCRADP SGKTLTAWMN EMALYVKSVD SKHLLSTGLE GFYGDSSPQR KTSLNPVAAN VLGTDFIANH KLDAIDFASI HSYPDLWFPN LDEKSRLNLL
301: RKWLECHLED AQNILKKPLI LGEFGKPTNT PGYTQAQRDA VFNATFDTIY ESAEKGGPAA GALFWHVISD GMNNFKDPLS IVLSENSTTV NIITEESRKL
401: GLIRGKGKLS KTKI

Arabidopsis Description

MAN3Mannan endo-1,4-beta-mannosidase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SG94]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.