Factsheet for PGSC0003DMT400083217

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400039828	Potato	cytosol	31.35	92.06
PGSC0003DMT400039735	Potato	cytosol	76.76	45.37
Solyc06g064520.2.1	Tomato	vacuole	98.38	43.96
PGSC0003DMT400092800	Potato	peroxisome	47.03	42.86
PGSC0003DMT400034545	Potato	cytosol	37.3	33.66
PGSC0003DMT400095096	Potato	cytosol	48.11	28.9
KRH23949	Soybean	vacuole	62.7	28.5
KRH39855	Soybean	vacuole	62.7	28.5
VIT_18s0089g00200.t01	Wine grape	vacuole	63.24	28.26
PGSC0003DMT400039596	Potato	vacuole	49.73	27.54
GSMUA_Achr9P08250_001	Banana	vacuole	60.54	24.89
GSMUA_Achr6P12730_001	Banana	golgi, vacuole	50.81	22.87
PGSC0003DMT400009479	Potato	cytosol, nucleus, peroxisome	46.49	22.69
PGSC0003DMT400090248	Potato	cytosol	32.97	22.34
PGSC0003DMT400009055	Potato	extracellular, golgi, vacuole	49.73	21.25
PGSC0003DMT400034535	Potato	cytosol, nucleus, vacuole	38.92	18.23
PGSC0003DMT400080203	Potato	endoplasmic reticulum	43.78	18.04
PGSC0003DMT400034196	Potato	golgi, mitochondrion, plastid, vacuole	38.38	15.99
PGSC0003DMT400047236	Potato	vacuole	35.68	14.97
GSMUA_Achr6P12740_001	Banana	extracellular, vacuole	18.92	13.94
PGSC0003DMT400039582	Potato	vacuole	7.57	6.42
GSMUA_Achr6P28970_001	Banana	extracellular, golgi	3.24	2.73
PGSC0003DMT400092618	Potato	extracellular	0.0	0.0
PGSC0003DMT400093759	Potato	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400083217	EnsemblPlantsGene:PGSC0003DMG400033125	Gene3D:3.20.20.80	InterPro:Glycoside_hydrolase_SF	PANTHER:PTHR31451	PANTHER:PTHR31451:SF15
PGSC:PGSC0003DMG400033125	SUPFAM:SSF51445	UniParc:UPI0002967945	UniProt:M1D6Q3	MapMan:21.2.3.2.2	:

Description

Mannan endo-1,4-beta-mannosidase 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400033125]

Coordinates

chr6:-:47721522..47722692

Molecular Weight (calculated)

20780.7 Da

IEP (calculated)

6.233

GRAVY (calculated)

-0.318

Length

185 amino acids

Sequence
(BLAST)

001: MASFVKSLDN KHLLEIGMEG FYGDSVPERK SVNPSYQVGT DFISNHLIKE IDFATIHAYT DQWLSGQSDD AQMIFMQRWM TSHWQDAKNI LKKPLVLAEF
101: GKSSRDPGYN QNIRDTFMST IYRNIYSLAK DGGTMGGSLI WQLVAQGMEN YEDGYCIELG KNPSTAGIIT SQSHAMTALA HLVKI

Best Arabidopsis Sequence Match ( AT1G02310.1 )
(BLAST)

001: MLNILPFFLF FLPFLIGNNR ICVAVKTGFV GRNGTQFVLN GEQVYLNGFN AYWMMTTAAD TASKGRATVT TALRQASAVG MNVARIWGFN EGDYIPLQIS
101: PGSYSEDVFK GLDFVVYEAG RFNIKLIISL VNNFEDYGGR KKYVEWAGLD EPDEFYTNSA VKQFYKNHVK TVLTRKNTIT GRMYKDDPTI FSWELINEPR
201: CNDSTASNIL QDWVKEMASY VKSIDSNHLL EIGLEGFYGE SIPERTVYNP GGRVLTGTDF ITNNQIPDID FATIHIYPDS WLPLQSSRTG EQDTFVDRWI
301: GAHIEDCDNI IKKPLLITEF GKSSKYPGFS LEKRNKFFQR VYDVIYDSAR AGGSCTGGVF WQLTTNRTGL LGDGYEVFMQ AGPNTTAQLI ADQSSKLKNL
401: KYPPLVTHSA E

Arabidopsis Description

MAN1Glycosyl hydrolase superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8AQX8]
SUBAcon: [golgi,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.