Factsheet for PGSC0003DMT400034196

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi, plastid, vacuole

Predictor Summary:

plastid 2
extracellular 2
mitochondrion 2
vacuole 2
cytosol 1
endoplasmic reticulum 1
plasma membrane 1
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, mitochondrion, plastid, vacuole
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	extracellular
iPSORT:	mitochondrion
MultiLoc:	vacuole
Plant-mPloc:	cytosol
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g008300.2.1	Tomato	golgi, mitochondrion, vacuole	97.75	97.75
PGSC0003DMT400047236	Potato	vacuole	82.43	82.99
Bra036494.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	46.62	71.63
VIT_12s0028g03610.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	69.59	71.53
CDY05783	Canola	extracellular, plasma membrane, vacuole	66.89	68.91
AT2G20680.1	Thale cress	plasma membrane, vacuole	67.12	68.82
Bra036493.1-P	Field mustard	vacuole	65.32	68.56
CDY31945	Canola	vacuole	65.32	68.56
Bra031137.1-P	Field mustard	golgi, vacuole	66.67	68.52
CDY13860	Canola	golgi, vacuole	66.67	68.52
CDX81978	Canola	golgi, vacuole	65.99	67.82
AT4G28320.1	Thale cress	vacuole	65.09	67.05
KRH25580	Soybean	mitochondrion	65.77	66.97
KRH22381	Soybean	vacuole	64.41	66.82
KRH55954	Soybean	mitochondrion, vacuole	65.54	66.74
KRH26952	Soybean	extracellular, plasma membrane, vacuole	64.19	66.59
CDY18983	Canola	vacuole	63.29	65.2
Bra026266.1-P	Field mustard	vacuole	63.29	65.2
CDX89187	Canola	vacuole	63.29	65.2
GSMUA_Achr1P04970_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	60.36	61.47
GSMUA_Achr5P09360_001	Banana	endoplasmic reticulum, extracellular, vacuole	53.83	60.97
GSMUA_Achr8P20030_001	Banana	golgi, plastid, vacuole	57.88	57.37
TraesCS3B01G307900.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	56.98	56.98
TraesCS3A01G274200.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	56.98	56.98
TraesCS3D01G273400.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	56.76	56.63
Zm00001d043443_P001	Maize	plasma membrane	56.76	55.63
Os01t0746700-00	Rice	endoplasmic reticulum, plasma membrane, vacuole	55.18	55.06
HORVU3Hr1G071210.3	Barley	extracellular, plasma membrane, vacuole	57.66	54.7
EES03598	Sorghum	endoplasmic reticulum, vacuole	56.53	54.45
PGSC0003DMT400039828	Potato	cytosol	7.66	53.97
GSMUA_Achr10P...	Banana	nucleus, plasma membrane, plastid, vacuole	58.56	53.94
PGSC0003DMT400034535	Potato	cytosol, nucleus, vacuole	44.37	49.87
PGSC0003DMT400092800	Potato	peroxisome	22.52	49.26
PGSC0003DMT400039735	Potato	cytosol	33.33	47.28
PGSC0003DMT400093759	Potato	cytosol	13.06	47.15
PGSC0003DMT400090248	Potato	cytosol	28.6	46.52
PGSC0003DMT400092618	Potato	extracellular	13.51	46.51
PGSC0003DMT400009479	Potato	cytosol, nucleus, peroxisome	39.64	46.44
PGSC0003DMT400095096	Potato	cytosol	31.98	46.1
PGSC0003DMT400039596	Potato	vacuole	33.11	44.01
PGSC0003DMT400009055	Potato	extracellular, golgi, vacuole	40.77	41.8
PGSC0003DMT400034545	Potato	cytosol	18.24	39.51
PGSC0003DMT400080203	Potato	endoplasmic reticulum	39.86	39.42
PGSC0003DMT400083217	Potato	cytosol	15.99	38.38
PGSC0003DMT400039582	Potato	vacuole	18.24	37.16

Protein Annotations

EntrezGene:102589884	MapMan:21.2.3.2.2	Gene3D:3.20.20.80	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553
GO:GO:0005575	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021
GO:GO:0016787	GO:GO:0016798	InterPro:Glyco_hydro_5	InterPro:Glycoside_hydrolase_SF	UniProt:M1B0A1	PFAM:PF00150
EnsemblPlantsGene:PGSC0003DMG400013146	PGSC:PGSC0003DMG400013146	EnsemblPlants:PGSC0003DMT400034196	PANTHER:PTHR31451	PANTHER:PTHR31451:SF1	SUPFAM:SSF51445
TMHMM:TMhelix	UniParc:UPI00029651AD	RefSeq:XP_006367645.1	SEG:seg	:	:

Description

Endo-beta-mannanase [Source:PGSC_GENE;Acc:PGSC0003DMG400013146]

Coordinates

chr10:-:3809163..3814216

Molecular Weight (calculated)

51682.5 Da

IEP (calculated)

7.648

GRAVY (calculated)

-0.403

Length

444 amino acids

Sequence
(BLAST)

001: MVQSPMSRKL ARNGGLFYPV IGFALFVTFL YLAFGDLWGF NFNREEIKLS FVERNGTQFF VDGKAFYING WNSYWLMDHA VDYSNRPRIK GILQAGAKMG
101: LTVCRTWAFN DGGYNALQIS PGRFDERVFR ALDHVIAEAR KNGIRLMLSL VNNLHAFGGK TEYVKWAEKE GVALSSSNDS FFYDPTIRRY FKNYVKTVLT
201: RRNIYTGMEY RDDPTIFAWE LINEPRCMTD PSGDTLQDWI EEMSTFVKSI DRKHLLTVGL EGFYGRKSPK RSSGNPEFWA ADLGSDFIRN SMLSTIDFAS
301: VHVYPDHWFH DKKFEEKLKF AAKWMLSHIE DGDKELRKPI MFTEFGLSNE NEDFEPAQRD RFYKMVLDFI YKSAKRNRSG AGSFFWQFLV EGMELYNDDF
401: GIVPWERPST YQLITEQSCR LAKEHGVLPT QMEHLKDFCA STRL

Best Arabidopsis Sequence Match ( AT2G20680.1 )
(BLAST)

001: MAAPTGNGPV IPILGFLTCV AFIYLSFGDL WFGLKTEGEL AFVKRNGTQF VVDGKALYVN GWNSYWFMDH AVNDHSRHRV SAMLEAGAKM GLTVCRTWAF
101: NDGGYNALQI SPGRFDERVF KALDHVIAEA KTHGVRLLLS LVNNLQAYGG KTQYVNWAWQ EGVGLSSSND SFFFDPSIRR YFKNYLTVLL TRKNSLTGIE
201: YRNDPTIFAW ELINEPRCMS DVSGDTLQDW INEMTAFIKS IDNKHLLTVG LEGFYGPSSP KKLTVNPERW ASELGSDFVR NSDSPNIDFA SVHIYPDHWF
301: HDQGFEEKLK FVVKWMLSHI EDGDKELKKP VLFTEFGLSN LNKDYDPSQR DRFYRTIFDV IYKSAKRKRS GAGTLVWQFL IEGMEGFNDD FGIVPWEQDS
401: IQRLMIEQSC RLSRITGRHL LDKKSIEMCS HRP

Arabidopsis Description

MAN2Mannan endo-1,4-beta-mannosidase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q7Y223]
SUBAcon: [plasma membrane,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.