Factsheet for VIT_18s0089g00170.t01

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 7
plasma membrane 5
golgi 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0089g00160.t01	Wine grape	vacuole	88.83	88.83
VIT_18s0089g00180.t01	Wine grape	vacuole	73.2	87.02
VIT_18s0089g00140.t01	Wine grape	cytosol, peroxisome, plastid, vacuole	84.86	81.62
VIT_18s0089g00190.t01	Wine grape	extracellular, vacuole	79.16	79.35
KRH39855	Soybean	vacuole	72.21	71.5
KRH23949	Soybean	vacuole	71.71	71.01
VIT_18s0089g00200.t01	Wine grape	vacuole	67.0	65.22
GSMUA_Achr9P08250_001	Banana	vacuole	67.25	60.22
GSMUA_Achr6P12740_001	Banana	extracellular, vacuole	37.47	60.16
GSMUA_Achr6P12730_001	Banana	golgi, vacuole	57.82	56.69
GSMUA_Achr6P28970_001	Banana	extracellular, golgi	28.29	51.82
VIT_18s0001g12830.t01	Wine grape	extracellular, vacuole	53.85	50.12
VIT_04s0023g02130.t01	Wine grape	vacuole	52.85	49.19
VIT_08s0058g01460.t01	Wine grape	cytosol, nucleus, plastid, vacuole	47.64	47.06
VIT_08s0058g01480.t01	Wine grape	cytosol, mitochondrion, vacuole	48.14	43.3
VIT_00s0187g00280.t01	Wine grape	golgi, vacuole	43.42	38.98
VIT_12s0028g03610.t01	Wine grape	endoplasmic reticulum, golgi, vacuole	41.69	38.89
VIT_00s0187g00320.t01	Wine grape	golgi, vacuole	42.93	38.36

Protein Annotations

EntrezGene:100261910	wikigene:100261910	MapMan:21.2.3.2.2	Gene3D:3.20.20.80	ProteinID:CBI17042	ProteinID:CBI17042.3
UniProt:D7SN13	EMBL:FN594956	GO:GO:0003674	GO:GO:0003824	GO:GO:0004553	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0016798
GO:GO:0016985	GO:GO:0046355	InterPro:Glyco_hydro_5	InterPro:Glycoside_hydrolase_SF	EntrezGene:LOC100261910	wikigene:LOC100261910
PFAM:PF00150	PANTHER:PTHR31451	PANTHER:PTHR31451:SF34	SUPFAM:SSF51445	SignalP:SignalP-noTM	TMHMM:TMhelix
UniParc:UPI00015CBFA6	ArrayExpress:VIT_18s0089g00170	EnsemblPlantsGene:VIT_18s0089g00170	EnsemblPlants:VIT_18s0089g00170.t01	RefSeq:XP_002272567	RefSeq:XP_002272567.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr18:-:27919293..27920966

Molecular Weight (calculated)

45556.1 Da

IEP (calculated)

8.015

GRAVY (calculated)

-0.289

Length

403 amino acids

Sequence
(BLAST)

001: MAYYRRSSLL SVLFLLLALV CEARVLLQSP GFVQTQNTQF VLDGSPFFFN GFNSYWMMNV AADPSQRNKI SEVFGQATAS RLSVCRTWAF NDGGNQALQI
101: SPGVYDERVF QGLDFVISEA KRYGVRLILS LSNNYKDFGG RPQYVNWAKS AGAPVNKDDD FYTNEVVKGY YKNHVKRVLT RINTITRVAY KDDPTIMAWE
201: LINEPRCQVD YSGKTLNGWI QEMATYVKSI DNKHLLTVGM EGFYGDSMPE KKAINPGYQV GTDFISNHLI KEIDFTTIHA YPDIWLSGKD DSSQMAFMQR
301: WTMSHWTDSR TIIKKPMVFS EFGKSSKDPG YSLSARDSFL NAVYTNIYNF ARNGGIGGGL VWQLMAEGMQ SYDDGYEIVL SQTPSTSGLV TQQSNKMIAL
401: DRV

Best Arabidopsis Sequence Match ( AT3G10890.1 )
(BLAST)

001: MKCLCFVVLL AILIAQNSSD LGVKSASSDG FVSRKGVQFI LNGKPFYANG FNAYWLAYEA TDSTTRFKIT YVFQNATIHD LTIVRTWGFR DGGYRALQIA
101: PGVYDEKTFQ GLDFAIAEAK RLGIKMIITF VNNYSDFGGR KQYVDWAKNT GQNVSSDDDF YTNPLVKQYY KNHVKTMVNR VNTFTKVEYK DEPTIMGWEL
201: MNEPQCRADP SGKTLTAWMN EMALYVKSVD SKHLLSTGLE GFYGDSSPQR KTSLNPVAAN VLGTDFIANH KLDAIDFASI HSYPDLWFPN LDEKSRLNLL
301: RKWLECHLED AQNILKKPLI LGEFGKPTNT PGYTQAQRDA VFNATFDTIY ESAEKGGPAA GALFWHVISD GMNNFKDPLS IVLSENSTTV NIITEESRKL
401: GLIRGKGKLS KTKI

Arabidopsis Description

MAN3Mannan endo-1,4-beta-mannosidase 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SG94]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.