CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11173	Canola	endoplasmic reticulum, vacuole	53.33	85.07
AT5G01930.1	Thale cress	endoplasmic reticulum	50.35	79.24
VIT_08s0058g01460.t01	Wine grape	cytosol, nucleus, plastid, vacuole	35.89	62.01
Solyc10g074920.1.1	Tomato	extracellular	37.16	58.35
PGSC0003DMT400080203	Potato	endoplasmic reticulum	36.88	57.91
KRH64877	Soybean	endoplasmic reticulum	38.01	57.88
VIT_08s0058g01480.t01	Wine grape	cytosol, mitochondrion, vacuole	36.45	57.37
KRH00473	Soybean	nucleus	36.45	55.63
KRH40712	Soybean	nucleus	36.88	53.17
KRH09553	Soybean	endoplasmic reticulum, plastid, vacuole	37.02	52.62
GSMUA_Achr3P09750_001	Banana	endoplasmic reticulum	34.18	51.94
GSMUA_Achr7P22010_001	Banana	cytosol	27.8	47.34
HORVU4Hr1G058920.3	Barley	cytosol	11.06	46.43
Os12t0117300-00	Rice	cytosol	24.4	45.03
Os11t0118200-01	Rice	cytosol	12.77	44.55
HORVU3Hr1G057870.3	Barley	cytosol	10.21	44.44
TraesCS5D01G145900.1	Wheat	cytosol	24.11	44.04
TraesCS5B01G145200.1	Wheat	mitochondrion, plasma membrane, vacuole	25.25	42.38
Zm00001d005052_P002	Maize	plasma membrane	25.96	42.26
EES09143	Sorghum	cytosol, plasma membrane, plastid, vacuole	25.53	42.15
TraesCS5A01G146400.1	Wheat	mitochondrion, plasma membrane, plastid, vacuole	25.11	42.14
CDX73899	Canola	extracellular	17.02	42.11
HORVU5Hr1G046370.1	Barley	mitochondrion	24.96	41.9
CDX89985	Canola	golgi, vacuole	22.84	39.17
CDY15229	Canola	golgi, vacuole	22.41	38.73
CDY36280	Canola	endoplasmic reticulum, extracellular, vacuole	22.41	38.07
CDY31945	Canola	vacuole	21.84	36.41
HORVU5Hr1G083060.1	Barley	cytosol, plastid, vacuole	7.94	36.36
CDY13860	Canola	golgi, vacuole	22.27	36.34
CDX81978	Canola	golgi, vacuole	22.27	36.34
CDY45231	Canola	extracellular, vacuole	23.97	36.03
CDX89187	Canola	vacuole	21.99	35.96
CDY18983	Canola	vacuole	21.84	35.73
CDY05783	Canola	extracellular, plasma membrane, vacuole	21.84	35.73
HORVU5Hr1G083020.2	Barley	extracellular, mitochondrion, plastid, vacuole	6.1	33.33
HORVU6Hr1G036770.2	Barley	cytosol	4.68	26.4
HORVU3Hr1G003960.2	Barley	cytosol	4.26	26.09
CDY68324	Canola	endoplasmic reticulum, vacuole	23.83	20.41
HORVU6Hr1G009620.1	Barley	cytosol	4.4	19.75

Protein Annotations

MapMan:17.4.1.2.1.2	MapMan:21.2.3.2.2	Gene3D:3.20.20.80	Gene3D:3.30.70.3150	GO:A0A078J998	UniProt:A0A078J998
EnsemblPlants:CDY61603	ProteinID:CDY61603	ProteinID:CDY61603.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003743	GO:GO:0003824	GO:GO:0004553	GO:GO:0005488	GO:GO:0005975	GO:GO:0006412
GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00034094001	InterPro:Glyco_hydro_5	InterPro:Glycoside_hydrolase_SF	PFAM:PF00150
PFAM:PF01873	PANTHER:PTHR31451	PANTHER:PTHR31451:SF35	SMART:SM00653	SUPFAM:SSF100966	SUPFAM:SSF51445
InterPro:Transl_init_fac_IF2/IF5	InterPro:Transl_init_fac_IF2/IF5_N	UniParc:UPI0004EE5253	SEG:seg	:	:

Description

BnaC03g71320DBnaC03g71320D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J998]

Coordinates

chrLK034016:-:3966..8170

Molecular Weight (calculated)

80609.4 Da

IEP (calculated)

7.713

GRAVY (calculated)

-0.415

Length

705 amino acids

Sequence
(BLAST)

001: MDLQQEQEAC WKLELDKVTK LDPSKKKKKK KKKLFIREDA TYDSEPDYGY AELLSRVFDM LREEEVSTER PRTVMMRRPQ LLAQGTQITV CLDFAHLCTT
101: IHRKPGHVIK FLLGQMETKG WLNKQHQLEM KGLVSSQHFQ AVFQRYIAAA KVQTQLSRRT MVFPLSAVRC IDQRTESPVN MELINFKSHV LGGALSHVLQ
201: VSYLSVLELG TFVSLALFVL CSAVFMILTQ HKALANSHGV NSEEEWEMVQ RKGQQFTLNG QPFYVNGFNT YWMMTLAADN STRGKVTDVF QQASAVGLTV
301: GRTWAFNDGQ WRALQKSPSV YDEDVFKKKK RRKEKKERKN ECAWSSWIKT AWESCGIWSN HEKEEPLKVR AAEKDQTASL EEIQQDVIFG FLMGEICELV
401: EHMCDVWEIN KKPDRWKRES SGVMRKLETK GADEPVTKEE WDEFVKYTVL NRVNTFTNIT YKNDPTIFAW ELMNEPRCPS DPSGDKLQSW IQEMAVFVKS
501: LDAKHMVEIG LEGFYGPSAP ARTKFNPNPY AAQVGTDFIR NNQALGVDFA SVHVYPDAWI SPAVSDTFLE FTNSWMQAHV EDAETYLGMP VLFTEFGVSA
601: HDPGFNTSFR DMMLNTVYKM TLNSTRKGGA GAGSLVWQVF PQGAEFMDDG YAVYLTRAHT ASKIISLQSK RLAIFNSLCG WRCKWGCKKK NHTALDALVS
701: HDDEL

Best Arabidopsis Sequence Match ( AT5G01930.1 )
(BLAST)

001: MKDQLGFRIV LCSAVFIILT QNRALADLDS ESHEVNSESV GEEQWEMVQR KGMQFTLNGQ PFYVNGFNTY WMMTLAADNS TRGKVTEVFQ QASAVGMTVG
101: RTWAFNDGQW RALQKSPSVY DEEVFKALDF VLSEARKYKI RLILSLVNNW DAYGGKAQYV KWGNASGLNL TSDDDFFTNP TLRNFYQSHV RTVLNRVNTF
201: TNITYKNDPT IFAWELMNEP RCPSDPSGDK LQSWIQEMAV FVKSLDAKHL VEIGLEGFYG PSAPARTRFN PNPYAAQVGT DFIRNNQVLG IDFASVHVYP
301: DSWISPAVSN SFLEFTSSWM QAHVEDAEMY LGMPVLFTEF GVSAHDPGFN TSFRDMMLNT VYKMTLNSTR KGGAGAGSLV WQVFPQGAEF MDDGYAVYLT
401: RAHTASKIIS LQSKRLAIFN SLCSWRCRWG CKKKNQTALD ALLSHDEL

Arabidopsis Description

MAN6Mannan endo-1,4-beta-mannosidase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZV3]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.